java_genomics_toolkit: revision graph

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Incorporate fix: https://github.com/timpalpant/java-genomics-toolkit/commit/9a6c61b7c6b8d85a1cd3f595eed657a537b85dc9 draft default tip
Sat, 09 Feb 2019 14:02:24 -0500, by timpalpant
Reupload since last upload did not load correctly draft
Tue, 19 Jun 2012 22:15:09 -0400, by timpalpant
Deleted selected files draft
Tue, 19 Jun 2012 22:14:11 -0400, by timpalpant
Fix a bug in GeneTrackToWig where +/- strands were not merged correctly. Add option to vary the chunk size of tools that process chromosomes in chunks. draft
Tue, 19 Jun 2012 22:09:23 -0400, by timpalpant
Improve file type autodetection draft
Mon, 18 Jun 2012 14:50:31 -0400, by timpalpant
Reuploaded to see if tools get loaded correctly this time. draft
Fri, 15 Jun 2012 15:10:26 -0400, by timpalpant
Delete all files draft
Fri, 15 Jun 2012 15:10:00 -0400, by timpalpant
Performance improvements to Wig file checksumming. Bug fix in Autocorrelation tool. draft
Fri, 15 Jun 2012 15:07:33 -0400, by timpalpant
Add back tool_data_table_conf.xml.sample since apparently it's still needed. draft
Sat, 09 Jun 2012 16:10:42 -0400, by timpalpant
Add sam_fa_indices.loc.sample to enable DNAProperty and FindNMer tools that require samtools indices to be installed. draft
Sat, 09 Jun 2012 16:06:25 -0400, by timpalpant
Update normalization tools to allow normalizing by chromosome (Z-scorer, scale, etc.) Add new tool to convert any interval file to Bed format. Miscellaneous bug fixes. draft
Sat, 09 Jun 2012 16:03:59 -0400, by timpalpant
Uploaded draft
Sat, 19 May 2012 10:40:16 -0400, by timpalpant
Uploaded draft
Sat, 19 May 2012 10:36:45 -0400, by timpalpant
Added help for all tools in the toolkit. Many bug fixes and a few new nucleosome tools. draft
Wed, 25 Apr 2012 16:53:48 -0400, by timpalpant

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