Mercurial > repos > triasteran > catdc_docker_test

comparison tmp2/docker_test.xml @ 7:2a8b693c33d9 draft

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author triasteran
date Tue, 08 Mar 2022 11:39:35 +0000
parents 316a0be8dc9a
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6:316a0be8dc9a 7:2a8b693c33d9
2 <description>tail-to-head</description> 2 <description>tail-to-head</description>
3 <requirements> 3 <requirements>
4 <container type="docker">triasteran/bowite0127:latest</container> 4 <container type="docker">triasteran/bowite0127:latest</container>
5 </requirements> 5 </requirements>
6 <command> 6 <command>
7 echo "Galaxy slots passed through contain as \$GALAXY_SLOTS"; 7 echo $input1
8 cat $input1
9 #for $q in $queries
10 ${q.input2}
11 #end for
12 &gt; $out_file1;
13 echo "Work dir output" &gt; working_file
14 bowtie --version > $out_file1 8 bowtie --version > $out_file1
15 python2 --version > $out_file1 9 python2 --version > $out_file1
16 bowtie-build --version $out_file1 10 bowtie-build --version $out_file1
17 </command> 11 </command>
18 <inputs> 12 <inputs>
19 <param name="input1" type="data" label="Concatenate Dataset"/> 13 <param name="input1" type="data" label="Concatenate Dataset"/>
20 <repeat name="queries" title="Dataset">
21 <param name="input2" type="data" label="Select" />
22 </repeat>
23 </inputs> 14 </inputs>
24 <outputs> 15 <outputs>
25 <data name="out_file1" format="input" metadata_source="input1"/> 16 <data name="out_file1" format="input"/>
26 <data name="out_file2" format="txt" from_work_dir="working_file" />
27 </outputs> 17 </outputs>
28 <help> 18 <help>
29 </help> 19 </help>
30 </tool> 20 </tool>