Mercurial > repos > triasteran > catdc_docker_test

changeset 7:2a8b693c33d9 draft

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Uploaded
author triasteran
date Tue, 08 Mar 2022 11:39:35 +0000
parents 316a0be8dc9a
children 7e70e7a0f4bb
files tmp2/docker_test.xml
diffstat 1 files changed, 2 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/tmp2/docker_test.xml	Tue Mar 08 11:35:06 2022 +0000
+++ b/tmp2/docker_test.xml	Tue Mar 08 11:39:35 2022 +0000
@@ -4,26 +4,16 @@
       <container type="docker">triasteran/bowite0127:latest</container>
     </requirements>
     <command>
-      echo "Galaxy slots passed through contain as \$GALAXY_SLOTS";
-      cat $input1
-      #for $q in $queries
-            ${q.input2}
-      #end for
-      &gt; $out_file1;
-      echo "Work dir output" &gt; working_file
+      echo $input1
       bowtie --version > $out_file1
       python2 --version > $out_file1
       bowtie-build --version $out_file1
     </command>
     <inputs>
         <param name="input1" type="data" label="Concatenate Dataset"/>
-        <repeat name="queries" title="Dataset">
-            <param name="input2" type="data" label="Select" />
-        </repeat>
     </inputs>
     <outputs>
-        <data name="out_file1" format="input" metadata_source="input1"/>
-        <data name="out_file2" format="txt" from_work_dir="working_file" />
+        <data name="out_file1" format="input"/>
     </outputs>
     <help>
     </help>