Mercurial > repos > triasteran > ribogalaxy_umi_processing

comparison UMI_riboseq_tool/UMI.py @ 11:0b5c3e35cddb draft

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Uploaded
author jackcurragh
date Mon, 25 Jul 2022 11:34:03 +0000
parents d003917eaf2c
children cf1a0cbe5c34
comparison
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10:d003917eaf2c 11:0b5c3e35cddb
67 67
68 # Get paths 68 # Get paths
69 pathToFastaFile = argv[1] 69 pathToFastaFile = argv[1]
70 output = argv[2] 70 output = argv[2]
71 bool_gzip = True if argv[3].lower().capitalize() == 'True' else False 71 bool_gzip = True if argv[3].lower().capitalize() == 'True' else False
72 UMI_5_prime_length = argv[4] 72 UMI_5_prime_length = int(argv[4])
73 UMI_3_prime_length = argv[5] 73 UMI_3_prime_length = int(argv[5])
74 UMI_processing(pathToFastaFile, output, bool_gzip, UMI_5_prime_length, UMI_3_prime_length) 74 UMI_processing(pathToFastaFile, output, bool_gzip, UMI_5_prime_length, UMI_3_prime_length)
75 75
76 if __name__ == "__main__": 76 if __name__ == "__main__":
77 main() 77 main()