Mercurial > repos > triasteran > ribogalaxy_umi_processing

changeset 11:0b5c3e35cddb draft

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Uploaded
author jackcurragh
date Mon, 25 Jul 2022 11:34:03 +0000
parents d003917eaf2c
children 3bd2e8301575
files UMI_riboseq_tool/UMI.py
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/UMI_riboseq_tool/UMI.py	Fri Jul 15 12:43:45 2022 +0000
+++ b/UMI_riboseq_tool/UMI.py	Mon Jul 25 11:34:03 2022 +0000
@@ -69,8 +69,8 @@
     pathToFastaFile = argv[1]
     output = argv[2]
     bool_gzip = True if argv[3].lower().capitalize() == 'True' else False
-    UMI_5_prime_length = argv[4]
-    UMI_3_prime_length = argv[5]
+    UMI_5_prime_length = int(argv[4])
+    UMI_3_prime_length = int(argv[5])
     UMI_processing(pathToFastaFile, output, bool_gzip, UMI_5_prime_length, UMI_3_prime_length)
 
 if __name__ == "__main__":