Mercurial > repos > triasteran > trips_bam_to_sqlite
comparison trips_create_new_organism/Dockerfile @ 4:eca153850389 draft default tip
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author | triasteran |
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date | Tue, 29 Mar 2022 12:41:32 +0000 |
parents | b15d43a50435 |
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3:b15d43a50435 | 4:eca153850389 |
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1 FROM alpine | |
2 WORKDIR /tmp | |
3 COPY create_annotation_sqlite.py . | |
4 RUN chmod +x create_annotation_sqlite.py | |
5 RUN ln create_annotation_sqlite.py /usr/local/bin/create_annotation_sqlite | |
6 RUN export PATH="$PATH:/usr/local/bin" | |
7 ENV PATH="/usr/local/bin:${PATH}" | |
8 RUN apk add bash | |
9 RUN apk add python3 | |
10 RUN apk add py3-pip | |
11 RUN pip install --upgrade pip | |
12 RUN pip install --no-cache-dir 'pysqlite3==0.4.6' | |
13 RUN pip install --no-cache-dir 'regex==2022.1.18' | |
14 RUN pip install --no-cache-dir 'intervaltree==3.1.0' |