FROM alpine
WORKDIR /tmp 
COPY create_annotation_sqlite.py . 
RUN chmod +x create_annotation_sqlite.py
RUN ln create_annotation_sqlite.py /usr/local/bin/create_annotation_sqlite
RUN export PATH="$PATH:/usr/local/bin"
ENV PATH="/usr/local/bin:${PATH}"
RUN apk add bash
RUN apk add python3
RUN apk add py3-pip
RUN pip install --upgrade pip 
RUN pip install --no-cache-dir 'pysqlite3==0.4.6'
RUN pip install --no-cache-dir 'regex==2022.1.18'
RUN pip install --no-cache-dir 'intervaltree==3.1.0'