Mercurial > repos > triasteran > trips_bam_to_sqlite
comparison trips_create_new_organism/Dockerfile @ 3:b15d43a50435 draft
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| author | triasteran |
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| date | Tue, 29 Mar 2022 12:41:16 +0000 |
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| 2:6cbd0a215724 | 3:b15d43a50435 |
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| 1 FROM alpine | |
| 2 WORKDIR /tmp | |
| 3 COPY create_annotation_sqlite.py . | |
| 4 RUN chmod +x create_annotation_sqlite.py | |
| 5 RUN ln create_annotation_sqlite.py /usr/local/bin/create_annotation_sqlite | |
| 6 RUN export PATH="$PATH:/usr/local/bin" | |
| 7 ENV PATH="/usr/local/bin:${PATH}" | |
| 8 RUN apk add bash | |
| 9 RUN apk add python3 | |
| 10 RUN apk add py3-pip | |
| 11 RUN pip install --upgrade pip | |
| 12 RUN pip install --no-cache-dir 'pysqlite3==0.4.6' | |
| 13 RUN pip install --no-cache-dir 'regex==2022.1.18' | |
| 14 RUN pip install --no-cache-dir 'intervaltree==3.1.0' |