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annotate ctat_mutations-7cf8f5889a4d/test-data/varcalling.outdir/cancer.tab @ 2:c15d9049ab81 draft

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author trinity_ctat
date Wed, 14 Nov 2018 12:20:23 -0500
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c15d9049ab81 Uploaded
trinity_ctat
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1 CHROM POS REF ALT GENE DP QUAL MQ SAO NSF NSM NSN TUMOR TISSUE COSMIC_ID KGPROD RS PMC CHASM_PVALUE CHASM_FDR VEST_PVALUE VEST_FDR
c15d9049ab81 Uploaded
trinity_ctat
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2 chr5 474989 A G LOC100288152,SLC9A3 4 96.03 60 NA NA NA NA carcinoma_--_NS urinary_tract COSM4006021 NA NA NA 0.1114 0.2 0.96802 1
c15d9049ab81 Uploaded
trinity_ctat
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3 chr5 181224474 G A TRIM41 45 349.77 60 NA NA NA NA NA NA NA NA NA NA 0.0694 0.15 0.48052 1
c15d9049ab81 Uploaded
trinity_ctat
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4 chr8 143923759 G A PLEC 66 838.77 60 NA NA NA NA carcinoma_--_adenocarcinoma large_intestine COSM3750086 NA NA NA 0.0344 0.1 0.84202 1
c15d9049ab81 Uploaded
trinity_ctat
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5 chr12 56420869 G A TIMELESS 48 384.77 60 NA NA NA NA carcinoma_--_adenocarcinoma large_intestine COSM3753397 NA NA NA 0.0744 0.15 0.18439 0.95
c15d9049ab81 Uploaded
trinity_ctat
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6 chr17 7673767 C T TP53 61 1848.77 60 NA NA NA NA Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour_--_NS bone COSM3717625 NA NA NA 0 0.05 0.01447 0.15
c15d9049ab81 Uploaded
trinity_ctat
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7 chr17 7676154 G C TP53 80 2161.77 60 NA NA NA NA haematopoietic_neoplasm_--_acute_myeloid_leukaemia haematopoietic_and_lymphoid_tissue COSM3766193 NA NA NA 0.087 0.15 0.52717 1
c15d9049ab81 Uploaded
trinity_ctat
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8 chr17 43071077 T C BRCA1 4 92.03 60 NA NA NA NA haematopoietic_neoplasm_--_acute_myeloid_leukaemia haematopoietic_and_lymphoid_tissue COSM3755560 NA NA NA 0.0372 0.1 0.3446 1
c15d9049ab81 Uploaded
trinity_ctat
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9 chr17 43091983 T C BRCA1 4 84.03 60 NA NA NA NA haemangioblastoma_--_NS soft_tissue COSM3755561 NA NA NA 0.0002 0.05 0.64447 1
c15d9049ab81 Uploaded
trinity_ctat
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10 chr17 43092919 G A BRCA1 2 33.74 60 NA NA NA NA carcinoma_--_NS prostate COSM3755564 NA NA NA 0.0004 0.05 0.33539 1
c15d9049ab81 Uploaded
trinity_ctat
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11 chr17 43093454 C T BRCA1 11 425.77 60 NA NA NA NA rhabdomyosarcoma_--_embryonal soft_tissue COSM4989394 NA NA NA 0.0014 0.05 0.51068 1
c15d9049ab81 Uploaded
trinity_ctat
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12 chr19 39177761 G C PAK4 106 1134.77 60 NA NA NA NA NA NA NA NA NA NA 0.0004 0.05 0.01093 0.15
c15d9049ab81 Uploaded
trinity_ctat
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13 chr19 47271515 T C CCDC9 12 336.77 60 NA NA NA NA haematopoietic_neoplasm_--_acute_myeloid_leukaemia haematopoietic_and_lymphoid_tissue COSM3721172 NA NA NA 0.093 0.15 0.97622 1
c15d9049ab81 Uploaded
trinity_ctat
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14 chr20 46687147 C T TP53RK 26 423.77 60 NA NA NA NA carcinoma_--_ductal_carcinoma pancreas COSM3758608 NA NA NA 0.0834 0.15 0.88584 1