Mercurial > repos > tyty > structurefold
annotate upload/Iterative_mapping/map_ex.py @ 34:d74ed492efdd draft
Uploaded
| author | tyty |
|---|---|
| date | Mon, 20 Oct 2014 14:55:16 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 34 | 1 #!/usr/bin/env python |
| 2 # -*- coding: utf-8 -*- | |
| 3 | |
| 4 import sys | |
| 5 from read_file import * | |
| 6 from Bio import SeqIO | |
| 7 | |
| 8 map_file = sys.argv[1] | |
| 9 result_file = sys.argv[2] | |
| 10 | |
| 11 | |
| 12 #reads = read_t_file(read_file); | |
| 13 | |
| 14 f = open(map_file); | |
| 15 h = file(result_file, 'w') | |
| 16 | |
| 17 for aline in f.readlines(): | |
| 18 tline = aline.strip(); | |
| 19 tl = tline.split('\t'); | |
| 20 if len(tl)>4: | |
| 21 if int(tl[1].strip())== 0: | |
| 22 h.write(tline) | |
| 23 h.write('\n') | |
| 24 | |
| 25 | |
| 26 f.close(); | |
| 27 h.close() | |
| 28 | |
| 29 | |
| 30 | |
| 31 |