Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

annotate orthologs/evolmap_output_exclude.pl @ 0:5b9a38ec4a39 draft default tip

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First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 #!/usr/bin/perl
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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2
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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3 my $input = $ARGV[0];
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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4 my $excludeList = $ARGV[1];
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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5
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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6 my @species = split(/,/, $excludeList);
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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7
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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8 open(INPUT, $input);
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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9 open(OUTPUT, '>'."output.txt");
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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10 while(my $currLine = <INPUT>) {
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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11 my @currentLine = split(/\t/, $currLine);
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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12 my $flag = 0;
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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13 for(my $i = 0; $i < @species; $i++) {
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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14 if($species[$i] eq $currentLine[0]) {
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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15 $flag = 1;
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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16 }
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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17 }
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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18 if($flag == 0) {
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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19 print OUTPUT $currLine;
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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20 }
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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21 }
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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22 close(OUTPUT);
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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23 close(INPUT);