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annotate orthologs/hmmbuild.xml @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 <tool id="phytab_hmmbuild" name="phytab HMMBUILD" version="3.0">
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2 <description>hmmbuild :: profile HMM construction from multiple sequence alignments in phytab format.</description>
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3 <requirements>
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4 <requirement type="package">hmmbuild</requirement>
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5 </requirements>
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6 <command interpreter="python">
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7 hmmbuild.py -i $data > $hmmbuild_stdout 2>&amp;1
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8 </command>
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9 <inputs>
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10 <param format="txt" name="data" type="data" label="Sequence data" help="This should be sequence data from EvolMAP"/>
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11 </inputs>
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12 <outputs>
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13 <data format="txt" name="hmmbuild_stdout" label="${tool.name} on ${on_string}: stdout" />
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14 <data format="txt" name="hmmbuild_results" label="${tool.name} on ${on_string}: results" from_work_dir="data/results.data" />
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15 </outputs>
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16 <tests>
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17 </tests>
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18 <help>
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19 **hmmbuild v3.0**
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20
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21 Runs hmmbuild on MUSCLE alignment data.
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22
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23 See hmmbuild help: ftp://selab.janelia.org/pub/software/hmmer3/3.0/Userguide.pdf
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24 </help>
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25 </tool>