Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

annotate orthologs/ucsb_hamster/lib/wisecfg/gon120.bla @ 0:5b9a38ec4a39 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
1 # benner-gonnet matrix 2/95
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
2 # pam := 120
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
3 # print (DayhoffM (NewLogPAM1, pam));
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
4 # DayMatrix(Peptide, pam=120, Simil: max=16.556, min=-9.624, max offdiag=5.460,
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
5 # del=-22.183-1.396*(k-1))
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
6 A R N D C Q E G H I L K M F P S T W Y V B Z X *
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
7 5.9 -2.3 -2.0 -1.8 -0.1 -1.2 -0.9 -0.3 -2.6 -2.7 -3.0 -1.9 -1.7 -4.8 -0.6 1.6 0.2 -6.8 -4.8 0.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
8 -2.3 8.3 -1.0 -2.7 -4.5 1.6 -1.0 -3.0 -0.1 -5.3 -4.4 3.6 -3.8 -6.8 -3.0 -1.5 -1.6 -3.0 -3.7 -4.4 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
9 -2.0 -1.0 8.0 2.6 -4.1 0.1 -0.1 -0.7 1.4 -5.5 -6.1 0.5 -4.6 -5.8 -3.2 1.0 0.0 -6.8 -2.8 -5.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
10 -1.8 -2.7 2.6 8.2 -6.9 0.1 3.5 -1.4 -0.7 -8.0 -8.2 -0.8 -6.4 -8.7 -2.8 -0.5 -1.3 -9.6 -5.3 -6.5 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
11 -0.1 -4.5 -4.1 -6.9 14.4 -5.6 -6.8 -4.5 -3.1 -3.6 -3.9 -6.4 -2.6 -2.6 -6.8 -0.7 -2.1 -2.9 -2.0 -1.1 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
12 -1.2 1.6 0.1 0.1 -5.6 7.4 2.5 -3.0 1.7 -4.3 -3.0 2.0 -1.4 -5.3 -1.4 -0.7 -0.9 -4.9 -3.8 -3.6 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
13 -0.9 -1.0 -0.1 3.5 -6.8 2.5 7.2 -3.1 -0.6 -5.5 -5.7 1.1 -4.0 -7.8 -2.2 -0.9 -1.5 -7.8 -5.6 -3.8 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
14 -0.3 -3.0 -0.7 -1.4 -4.5 -3.0 -3.1 9.0 -3.7 -8.7 -8.2 -3.4 -6.5 -9.2 -4.1 -0.6 -3.5 -6.6 -7.4 -6.5 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
15 -2.6 -0.1 1.4 -0.7 -3.1 1.7 -0.6 -3.7 11.0 -4.8 -4.2 -0.2 -2.8 -1.4 -3.1 -1.4 -1.4 -2.8 2.6 -4.7 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
16 -2.7 -5.3 -5.5 -8.0 -3.6 -4.3 -5.5 -8.7 -4.8 7.2 2.8 -4.4 2.9 -0.3 -5.6 -4.4 -1.7 -4.6 -3.1 4.2 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
17 -3.0 -4.4 -6.1 -8.2 -3.9 -3.0 -5.7 -8.2 -4.2 2.8 6.6 -4.4 3.4 1.5 -4.4 -4.7 -3.4 -2.9 -2.0 1.3 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
18 -1.9 3.6 0.5 -0.8 -6.4 2.0 1.1 -3.4 -0.2 -4.4 -4.4 6.9 -2.7 -6.7 -2.4 -1.0 -0.6 -6.8 -4.4 -3.9 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
19 -1.7 -3.8 -4.6 -6.4 -2.6 -1.4 -4.0 -6.5 -2.8 2.9 3.4 -2.7 9.5 1.1 -5.6 -2.9 -1.6 -3.1 -2.2 1.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
20 -4.8 -6.8 -5.8 -8.7 -2.6 -5.3 -7.8 -9.2 -1.4 -0.3 1.5 -6.7 1.1 10.2 -7.2 -5.8 -4.7 2.7 5.5 -1.7 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
21 -0.6 -3.0 -3.2 -2.8 -6.8 -1.4 -2.2 -4.1 -3.1 -5.6 -4.4 -2.4 -5.6 -7.2 10.5 -0.5 -1.0 -8.9 -5.9 -4.2 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
22 1.6 -1.5 1.0 -0.5 -0.7 -0.7 -0.9 -0.6 -1.4 -4.4 -4.7 -1.0 -2.9 -5.8 -0.5 6.0 2.6 -5.7 -3.5 -2.8 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
23 0.2 -1.6 0.0 -1.3 -2.1 -0.9 -1.5 -3.5 -1.4 -1.7 -3.4 -0.6 -1.6 -4.7 -1.0 2.6 6.4 -6.7 -4.2 -0.3 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
24 -6.8 -3.0 -6.8 -9.6 -2.9 -4.9 -7.8 -6.6 -2.8 -4.6 -2.9 -6.8 -3.1 2.7 -8.9 -5.7 -6.7 16.6 3.3 -5.9 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
25 -4.8 -3.7 -2.8 -5.3 -2.0 -3.8 -5.6 -7.4 2.6 -3.1 -2.0 -4.4 -2.2 5.5 -5.9 -3.5 -4.2 3.3 11.1 -3.3 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
26 0.0 -4.4 -5.0 -6.5 -1.1 -3.6 -3.8 -6.5 -4.7 4.2 1.3 -3.9 1.0 -1.7 -4.2 -2.8 -0.3 -5.9 -3.3 6.5 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
27 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
28 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
29 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -9.6
5b9a38ec4a39 First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff changeset
30 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 -9.6 1