Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
annotate orthologs/ucsb_hamster/lib/wisecfg/worm.gf @ 0:5b9a38ec4a39 draft default tip
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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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1 # Splice sites and intron regions information for GeneWise-21 |
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2 # Tue Jan 14 16:50:39 IST 1997 |
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3 # Created by Mor Amitai (mor@compugen.co.il) |
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4 # dataset : C.Elegans data from the Sanger Centre. given by Ewan Birney |
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5 # preliminary results. For Ewan's use only |
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6 # Consensi are read from top down. The value, for a sequence, |
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7 # is the number in the line of the first consensus that |
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8 # matches the sequence. |
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9 # Note: the set of sequences that are represented by a consensus |
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10 # are all the sequences that match this consensus and none of the |
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11 # previous consensi |
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12 # |
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13 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of |
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14 # occurrences of each sequence in the database. |
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15 # In case of a consensus this is the number of occurrences of sequences |
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16 # that are represented by the consensus in the database divided by the |
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17 # number of sequences that are represented by the consensus. |
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18 # *stay_prob is the probability of the transition from the state to itself. |
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19 # No_Spacer_Prob is the probability of transition from Pyrimidine directly |
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20 # to 3SS (no spacer). |
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21 type 5SS |
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22 center 3 |
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23 phase all |
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24 begin consensus |
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25 AAAGTGAGTT 61 |
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26 GATGTAAGTT 51 |
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27 A-TGTAAGTT 28.25 |
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28 -AAGTGAGTT 28 |
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29 -AAGTAAGTT 24.75 |
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30 A-AGTGAGTT 22.3333 |
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31 AA-GTGAGTT 22 |
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32 TTGGT-AGTT 20.25 |
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33 AAGGTTTGT- 19.75 |
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34 -AGGTAATTT 19.25 |
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35 T-TGTAAGTT 19 |
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36 A-AGTAAGTT 18.3333 |
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37 AT-GTGAGTT 17 |
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38 GA-GTGAGTT 17 |
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39 -AGGTAAATT 16.75 |
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40 A-GGTTAGTT 16.75 |
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41 AAGGTAA-AA 13.5 |
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42 AAGGTAA-AT 13.25 |
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43 T--GTAAGTT 10.4 |
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44 -A-GTAAGTT 11.1429 |
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45 -T-GTAAGTT 10.3 |
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46 --GGTGAGTT 10.1667 |
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47 --AGTGAGTT 9.22222 |
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48 -C-GTAAGTT 8.8 |
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49 -T-GTGAGTT 8.33333 |
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50 --GGTTAGTT 8 |
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51 AA-GTAAG-A 7.73333 |
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52 -AGGTTTGT- 7.41667 |
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53 -AGGTGAG-A 7.0625 |
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54 CAGGTAA-A- 6.5625 |
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55 AA-GTA-GTT 6.5 |
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56 -A-GTTAGTT 6.41667 |
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57 -G-GTAAGTT 6.4 |
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58 -AGGTATTT- 6 |
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59 AA-GTAAG-T 5.54545 |
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60 -AGGTAAA-A 5.5 |
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61 -AAGTAAGT- 5.45455 |
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62 -A-GTAAGAA 5.36364 |
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63 --GGTATGTT 5.26667 |
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64 -TGGTGAGT- 5.25 |
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65 -AAGTGAGT- 5.16667 |
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66 -ATGTAAGT- 5.09091 |
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67 AAGGT-AGT- 5.09091 |
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68 -AGGTGAGA- 4.75 |
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69 -TGGTAAGT- 4.58333 |
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70 -AGGTAATT- 4.5 |
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71 -AGGTATGT- 4.41667 |
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72 --GGTAAGAT 4.28571 |
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73 --GGTAAGAA 4.25 |
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74 ---GTGAGTT 4.2 |
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75 --GGTTGGTT 3.5625 |
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76 -AGGTTTGA- 3.4375 |
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77 A--GTAAGT- 3.28571 |
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78 AAGGTAT-A- 3.125 |
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79 -AGGT-AGT- 2.61111 |
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80 --GGTAA-TT 2.575 |
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81 T--GTAAGT- 2.5 |
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82 --GGTT-GTT 2.42857 |
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83 -A-GTA-GTT 2.42424 |
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84 -AGGTAAG-- 2.23529 |
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85 ---GTTAGTT 2.16667 |
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86 ---GTAAGAT 2.04444 |
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87 A--GTGAGT- 1.97436 |
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88 A--GTA-GTT 1.9697 |
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89 -AGGTA--TT 1.84375 |
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90 -AGGTAA-A- 1.82143 |
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91 C--GTAAGT- 1.80556 |
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92 AA-GTGAG-- 1.7619 |
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93 AAGGTA---A 1.7234 |
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94 --GGTGAG-A 1.64286 |
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95 G--GTAAGT- 1.63889 |
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96 T--GTA-GTT 1.63636 |
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97 -TGGTAAG-- 1.625 |
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98 CAGGTA---A 1.54902 |
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99 --GGTGAG-T 1.54762 |
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100 AAGGTA---T 1.52632 |
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101 AAGGTT-G-- 1.46 |
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102 AA-GT-A-TT 1.45833 |
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103 CAGGTA---T 1.42857 |
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104 A--GTAAGA- 1.37838 |
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105 ---GTGAGTG 1.35897 |
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106 -AGGTG-GT- 1.16667 |
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107 --GGTATG-A 1.07407 |
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108 -AGGTT-TT- 0.952381 |
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109 -A-GTAAG-- 0.794118 |
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110 -AGGTAA--- 0.790698 |
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111 --GGTA-GT- 0.734375 |
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112 -A-GT-AGT- 0.731183 |
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113 --GGT-AGT- 0.696629 |
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114 -AGGTA-G-- 0.66 |
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115 ---GTAAG-A 0.643478 |
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116 -AGGT-AG-- 0.59375 |
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117 --GGTA-G-T 0.58871 |
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118 --GGTAA--A 0.583333 |
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119 AA-GTA-G-- 0.555556 |
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120 -AGGTAT--- 0.532787 |
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121 -A-GT--GTT 0.525 |
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122 --GGTT-GT- 0.515873 |
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123 -A-GTGAG-- 0.481481 |
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124 --GGTAA-A- 0.466667 |
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125 -AGGT-A-T- 0.466667 |
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126 -A-GTAA-T- 0.407407 |
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127 ---GTGAG-A 0.4 |
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128 -AGGTTT--- 0.39 |
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129 A-GGTA--T- 0.362319 |
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130 ---GTATGT- 0.326797 |
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131 ---GTAAG-- 0.221854 |
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132 -AAGTA--A- 0.219298 |
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133 ---GT--GTT 0.209402 |
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134 --GGTA-G-- 0.1875 |
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135 --GGT-AG-- 0.155556 |
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136 --GGTA--T- 0.15493 |
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137 -AGGT---A- 0.1375 |
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138 A--GTAA--- 0.116838 |
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139 -A-GTA--T- 0.109053 |
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140 ---GTT-GT- 0.0944444 |
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141 -AAGT-A--- 0.0761905 |
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142 ---GT--GAT 0.0670886 |
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143 -AGGT----- 0.0541575 |
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144 --GGTA---- 0.0411523 |
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145 ---GTA-G-- 0.037037 |
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146 ---GTAA--- 0.0363757 |
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147 ---GT-A-T- 0.0309423 |
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148 A--GT----T 0.0201761 |
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149 ---GTG-G-- 0.0192593 |
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150 ---GT--G-- 0.00953471 |
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151 ---GT---T- 0.0090535 |
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152 ---GT----- 0.00283019 |
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153 end consensus |
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154 type 5SS |
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155 center 3 |
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156 phase 0 |
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157 begin consensus |
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158 GATGTAAGTT 43 |
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159 AA-GTGAGTT 15.25 |
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160 A-TGTAAGTT 14.75 |
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161 AAGGTTTGT- 13.5 |
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162 GA-GTGAGTT 11.25 |
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163 AAGGTAA-TT 11 |
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164 CAGGTAA-TT 10.25 |
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165 A-AGTAAGTT 9.5 |
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166 -AGGTTAGTT 9 |
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167 -TGGTGAGTT 9 |
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168 AAGGTAA-AT 8.75 |
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169 GC-GTAAGTT 8.5 |
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170 T-TGTAAGTT 8.5 |
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171 -AGGTATTTT 7.75 |
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172 A--GTGAGTT 5.90909 |
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173 --GGTAAGTT 4.92308 |
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174 -A-GTAAGTT 5.25 |
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175 --GGTTAGTT 4.66667 |
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176 AAGGTAA--A 4.5 |
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177 -AGGTTTGT- 4.25 |
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178 --GGTGAGTT 4.125 |
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179 -A-GTAAGAA 3.73333 |
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180 AAGGTT-GT- 3.54545 |
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181 -AGGTGAGA- 3.5 |
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182 -ATGTAAGT- 3.41667 |
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183 --GGTATGTT 3.3125 |
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184 GAGGTAA-T- 3.26667 |
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185 CA-GT-AGTT 3.2 |
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186 -AGGTAAAA- 3.14286 |
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187 -TGGTGAGT- 2.75 |
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188 CAGGTAA--A 2.71429 |
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189 -AGGTGAG-A 2.66667 |
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190 -ATGTA-GTT 2.66667 |
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191 AAGGTAT-T- 2.5 |
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192 AAGGTT-GA- 2.4375 |
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193 CAGGTAT-T- 2.35714 |
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194 ---GTAAGTT 2.29167 |
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195 --GGTAAGAT 2.26667 |
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196 ---GTGAGTT 1.7 |
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197 -A-GT-AGTT 1.47619 |
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198 AA-GTAAG-- 1.40816 |
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199 -AGGTGAG-- 1.40625 |
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200 --TGTAAGT- 1.38889 |
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201 --GGTAAG-A 1.32075 |
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202 --GGTT-GTT 1.21429 |
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203 -A-GTGAGT- 1.16667 |
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204 --GGTAA-TT 1.12821 |
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205 AAGGTAT--- 1.125 |
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206 A--GTA-GTT 1.09756 |
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207 CAGGTA---T 1.05556 |
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208 AAGGTA---T 1 |
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209 CAGGT--GT- 1 |
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210 GAGGTA--T- 0.956522 |
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211 A-GGTA-GT- 0.871795 |
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212 AAGGT-A-T- 0.866667 |
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213 CAGGTA--A- 0.857143 |
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214 GA-GTAAG-- 0.829787 |
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215 -AGGTTTG-- 0.818182 |
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216 A--GTAAGA- 0.809524 |
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217 --GGTGAG-A 0.795455 |
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218 -A-GTGAGA- 0.75 |
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219 -TGGTA-G-T 0.74 |
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220 GAGGTAT--- 0.729167 |
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221 --GGT-AGTG 0.695652 |
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222 --AGTAAG-A 0.607843 |
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223 -AGGTTTT-- 0.546875 |
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224 ---GT-AGTT 0.488095 |
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225 ---GTAAGT- 0.45 |
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226 ---GTA-GTT 0.415929 |
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227 ---GTGAGT- 0.413793 |
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First commit of old repositories
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228 AAGGTA---- 0.40566 |
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First commit of old repositories
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229 CAGGTA---- 0.375 |
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First commit of old repositories
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230 GAGGTA---- 0.367188 |
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First commit of old repositories
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231 -AGGTT-G-- 0.337838 |
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232 --GGT-AG-T 0.289855 |
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233 -A-GT-A-TT 0.28655 |
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234 ---GTAAG-T 0.282051 |
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235 --GGTAA-T- 0.264957 |
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236 --GGTATG-- 0.264368 |
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First commit of old repositories
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237 AA-GT--GT- 0.259887 |
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238 --GGTAA-A- 0.244186 |
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239 A--GTAA--A 0.212644 |
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240 -ATGTA-G-- 0.171123 |
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241 -A-GTGA--A 0.15493 |
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242 --GGT--GT- 0.107914 |
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243 -AGGTT---- 0.0951684 |
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244 --GGTA-G-- 0.0941176 |
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245 -A-GT-AG-- 0.0711297 |
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246 --GGTA--T- 0.0663812 |
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247 -AAGTA---- 0.0590164 |
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248 ---GTT-GT- 0.0509259 |
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249 --TGTAA--- 0.0499376 |
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250 -AGGTG---- 0.0425532 |
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First commit of old repositories
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251 --GGTA---- 0.0223793 |
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First commit of old repositories
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252 ---GT-AG-- 0.0221502 |
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253 ---GTA-G-- 0.0173088 |
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254 ---GT-A-T- 0.0157715 |
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255 A--GT----T 0.0103437 |
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256 ---GT--G-- 0.00594251 |
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257 ---GT---T- 0.00467836 |
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258 ---GT----- 0.00116399 |
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259 end consensus |
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260 type 5SS |
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261 center 3 |
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262 phase 1 |
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263 begin consensus |
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264 A-AGTGAGTT 9.25 |
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First commit of old repositories
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265 TT-GTAAGTT 9.25 |
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First commit of old repositories
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266 -TGGTGAGTT 8.25 |
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First commit of old repositories
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267 A-TGTAAGTT 8 |
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First commit of old repositories
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268 -T-GTAAGTT 5.09091 |
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269 --AGTGAGTT 4.33333 |
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First commit of old repositories
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270 A--GTAAGTT 3.66667 |
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First commit of old repositories
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271 --GGTTAGTT 3.125 |
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First commit of old repositories
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272 -AGGTAA-TT 2.66667 |
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First commit of old repositories
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273 TTGGTAAG-- 2.2 |
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First commit of old repositories
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274 --GGTTTGTT 2.1875 |
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First commit of old repositories
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275 CA-GTAAGT- 2.06667 |
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First commit of old repositories
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276 T--GTAAGTT 2.81818 |
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First commit of old repositories
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277 --GGTGAGTA 1.9375 |
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First commit of old repositories
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278 ---GTGAGTT 1.70455 |
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First commit of old repositories
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279 -AGGTAA-A- 1.17188 |
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First commit of old repositories
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280 A--GTAAGT- 1.16667 |
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First commit of old repositories
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281 --AGT-AGTT 1 |
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First commit of old repositories
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282 -TGGTAAG-- 0.928571 |
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First commit of old repositories
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283 AA-GTAAG-- 0.909091 |
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First commit of old repositories
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284 --GGTA-GTT 0.884615 |
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First commit of old repositories
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285 ---GTAAGTA 0.878049 |
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First commit of old repositories
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286 --GGTGAGA- 0.796875 |
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First commit of old repositories
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287 A--GTGAGT- 0.727273 |
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First commit of old repositories
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288 AAGGTAT--- 0.714286 |
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First commit of old repositories
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289 -TGGTT-GT- 0.696429 |
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First commit of old repositories
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290 --AGTA-GTT 0.6875 |
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First commit of old repositories
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291 ---GTAAGAT 0.679245 |
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First commit of old repositories
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292 -AGGTT-GT- 0.660714 |
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First commit of old repositories
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293 ---GTAAGT- 0.521739 |
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First commit of old repositories
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294 --GGTATG-A 0.516667 |
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First commit of old repositories
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295 -AGGTAA--- 0.403846 |
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First commit of old repositories
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296 --GGTGAG-- 0.342105 |
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First commit of old repositories
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297 --GGTA--TT 0.316384 |
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First commit of old repositories
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298 A--GT--GTT 0.283333 |
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First commit of old repositories
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299 ---GTAAG-A 0.245283 |
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First commit of old repositories
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300 -AGGTA-G-- 0.228758 |
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First commit of old repositories
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301 -TGGTA-G-- 0.207317 |
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First commit of old repositories
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302 -A-GTGAG-- 0.19883 |
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First commit of old repositories
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303 -AGGTT-G-- 0.1875 |
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First commit of old repositories
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304 -TGGTAA--- 0.183333 |
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First commit of old repositories
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305 -AGGTG--T- 0.130802 |
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First commit of old repositories
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306 -AGGTA---- 0.109091 |
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First commit of old repositories
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307 ---GT-AGT- 0.103792 |
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First commit of old repositories
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308 ---GTAAG-- 0.103774 |
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First commit of old repositories
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309 ---GT--GTT 0.0700637 |
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First commit of old repositories
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310 -A-GTA--T- 0.0614035 |
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First commit of old repositories
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311 -AGGTT---- 0.0442708 |
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First commit of old repositories
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312 ---GTATG-- 0.0401554 |
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First commit of old repositories
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313 --GGTA---- 0.0193694 |
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First commit of old repositories
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314 --GGT--G-- 0.0173797 |
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First commit of old repositories
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315 A--GT-A--- 0.0144654 |
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First commit of old repositories
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316 ---GT-A--- 0.0048218 |
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First commit of old repositories
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317 ---GT--G-- 0.00395005 |
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First commit of old repositories
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318 ---GT----- 0.00155651 |
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First commit of old repositories
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319 end consensus |
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320 type 5SS |
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First commit of old repositories
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321 center 3 |
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322 phase 2 |
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323 begin consensus |
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First commit of old repositories
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324 -AAGTGAGTT 17.25 |
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First commit of old repositories
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325 -AAGTAAGTT 13.75 |
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First commit of old repositories
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326 -GAGTGAGTT 8.5 |
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First commit of old repositories
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327 TG-GTAAGTT 7.75 |
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First commit of old repositories
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328 A--GTAAGTT 4.26667 |
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First commit of old repositories
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329 T--GTAAGTT 4.09091 |
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First commit of old repositories
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330 -A-GTGAGTT 3.58333 |
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First commit of old repositories
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331 T--GTGAGTT 3.09091 |
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First commit of old repositories
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332 -AAGTAAGT- 3.08333 |
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First commit of old repositories
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333 -AAGTGAGT- 3 |
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First commit of old repositories
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334 A--GTGAGTT 2.90909 |
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First commit of old repositories
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335 -A-GTTAGTT 2.6875 |
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First commit of old repositories
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336 -AGGTAA-TT 2.5 |
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337 -A-GTAAGAA 2.4375 |
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First commit of old repositories
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338 -A-GTAAGAT 2.1875 |
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First commit of old repositories
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339 -A-GTATGTT 2.125 |
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First commit of old repositories
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340 A--GTAAGT- 1.24444 |
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First commit of old repositories
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341 --TGTAAGT- 1.13636 |
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First commit of old repositories
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342 --AGT-AGTT 1.13158 |
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343 -AGGTGAG-- 1.03333 |
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344 -AGGTAA--A 0.983051 |
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345 -AGGTT-GT- 0.966667 |
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346 --CGT-AGTT 0.857143 |
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347 -G-GTA-GTT 0.7 |
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348 --GGTAAGA- 0.660714 |
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349 --GGTT-GTT 0.645833 |
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350 -AGGTA-TT- 0.642857 |
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351 T--GT-AGTA 0.581818 |
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352 ---GTAAGT- 0.5 |
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353 ---GTA-GTT 0.429688 |
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354 ---GTGAGT- 0.427711 |
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355 -A-GTAAG-- 0.381944 |
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356 -AGGTAA--- 0.298387 |
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357 -AGGTA-G-- 0.272222 |
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358 A--GTAAG-- 0.25 |
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359 -A-GT--GTT 0.228571 |
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360 -AAGTA-G-- 0.2 |
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361 ---GTAA-TT 0.194444 |
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362 ---GTGAG-A 0.194444 |
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363 ---GTTAGT- 0.19209 |
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364 -AGGTTT--- 0.158333 |
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365 ---GT-AGAT 0.153488 |
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366 -AGGTA---- 0.100379 |
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367 ---GTAAG-- 0.097561 |
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368 --GGTAA--- 0.0759259 |
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369 -A-GT-A-T- 0.0700549 |
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370 --GGT--GT- 0.0628019 |
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371 AA-GTA---- 0.052381 |
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372 ---GTATG-- 0.0413437 |
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373 --GGT--G-- 0.0202815 |
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374 -A-GT-A--- 0.0149254 |
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375 ---GT---TT 0.0146813 |
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376 ---GT---T- 0.00532449 |
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377 ---GTA---- 0.00401891 |
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378 ---GT----- 0.00131086 |
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379 end consensus |
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380 type 3SS |
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381 center 3 |
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382 phase all |
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383 begin consensus |
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384 CAGAAA 372 |
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385 CAGATT 316 |
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386 CAGATG 290 |
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387 CAGATC 263 |
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388 CAGGAA 253 |
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389 CAGAAT 246 |
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390 CAGAAC 221 |
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391 CAGGTT 218 |
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392 CAGATA 215 |
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393 CAGAGA 200 |
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394 CAGGAT 175 |
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395 CAGAAG 167 |
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396 CAGACA 160 |
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397 CAGCAA 158 |
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398 CAGACT 151 |
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399 CAGGT- 148.667 |
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400 CAGGAG 139 |
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401 CAGCTC 129 |
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402 CAGAGT 127 |
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403 CAGGCT 125 |
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404 CAGGCA 124 |
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405 CAGCTT 116 |
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406 CAG-TC 115 |
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407 CAGAGC 112 |
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408 CAGGGA 112 |
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409 CAGACG 109 |
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410 CAGCCA 106 |
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411 CAG-TT 100 |
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412 CAGGAC 100 |
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413 CAGCTG 96 |
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414 CAGCAT 95 |
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415 CAGACC 90 |
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416 CAGTGA 89 |
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417 CAGCTA 85 |
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418 CAGGGT 85 |
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419 CAGCAC 80 |
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420 TAGAAA 80 |
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421 CAGGCC 77 |
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422 CAG-TG 73 |
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423 CAGAGG 72 |
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424 CAG-CA 70 |
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425 TAGGAA 66 |
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426 CAGGCG 65 |
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427 CAG-AC 62 |
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428 CAGTTA 62 |
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429 CAG-AT 61 |
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430 CAGTG- 60.3333 |
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First commit of old repositories
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431 CAGCGT 55 |
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432 TAGGTT 53 |
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433 TAGAAT 51 |
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434 CAGCCG 50 |
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435 TAGAT- 49.25 |
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436 CAGTC- 43 |
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437 TAGGT- 40.6667 |
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438 CAGC-- 37 |
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439 TAGG-T 32.3333 |
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440 TAGAC- 24.75 |
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441 TAG-AC 19.25 |
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442 TAG-CA 19 |
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443 TAG-GA 17.5 |
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444 TAGCT- 16 |
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445 -AGGGC 15 |
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446 AAGGT- 14.25 |
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447 TAG-A- 13 |
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448 AAGAT- 12.5 |
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449 TAG--T 10 |
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450 TAG--- 7.9375 |
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451 AAGA-- 5.25 |
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452 AAGG-- 4.63636 |
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453 AAG--- 1.84375 |
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454 -AG--- 1.60606 |
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455 end consensus |
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456 type 3SS |
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457 center 3 |
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458 phase 0 |
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459 begin consensus |
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|
460 CAGAAA 167 |
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First commit of old repositories
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461 CAGATT 160 |
5b9a38ec4a39
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462 CAGGTT 160 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
463 CAGATG 145 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
464 CAGATC 143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
465 CAGGAA 139 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
466 CAGAAT 113 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
467 CAGGAT 111 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
468 CAGAAC 100 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
469 CAGGT- 86.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
470 CAGGCT 82 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
471 CAGGCA 80 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
472 CAGA-A 79.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
473 CAGCTT 79 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
474 CAGGGA 79 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
475 CAGGAG 77 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
476 CAGCAA 75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
477 CAGCTC 72 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
478 CAGACT 70 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
479 CAGCCA 64 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
480 CAGGGT 59 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
481 CAGAAG 58 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
482 CAG-TC 57 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
483 CAGAGT 49 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
484 CAG-AC 48.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
485 CAGGCC 48 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
486 CAG-TT 45 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
487 CAGACC 45 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
488 TAGGAA 41 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
489 CAGAGC 39 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
490 CAGCAT 34 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
491 CAGGCG 33 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
492 CAGTTG 33 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
493 TAGAAA 33 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
494 TAGGAT 33 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
495 TAGGT- 26.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
496 CAG-TA 26 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
497 TAGAT- 23.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
498 CAGT-T 21.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
499 CAG-C- 19.7143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
500 CAG-GC 16.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
501 CAGC-- 15.2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
502 TAGAA- 14.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
503 TAGG-- 12.2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
504 TAGAC- 10 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
505 AAGGT- 9.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
506 TAG-T- 6.375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
507 TAG--A 5.85714 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
508 CAG-GG 10 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
509 TAG--T 4.57143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
510 AAGG-- 3.16667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
511 AAGA-- 2.875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
512 -AG--- 0.575221 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
513 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
514 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
515 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
516 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
517 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
518 CAGATG 88 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
519 CAGAAA 86 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
520 CAGGAA 80 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
521 CAGGTG 60 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
522 CAGAA- 56.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
523 CAGAT- 56.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
524 CAGCTG 55 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
525 CAGACG 53 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
526 CAGGAG 52 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
527 CAGCAA 43 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
528 CAGGAT 43 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
529 CAG-TC 37.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
530 CAGACT 33 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
531 CAG-T- 26.8571 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
532 CAGT-A 23.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
533 CAG-CA 24.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
534 CAG-AT 24 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
535 CAGAG- 22 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
536 CAG-CG 21.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
537 CAGTG- 19.6667 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
538 CAG-AC 19 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
539 CAG-CT 15 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
540 TAG-AA 12.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
541 TAGAT- 12.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
542 CAG-CC 11.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
543 CAGCG- 11.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
544 TAGGT- 9.25 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
545 CAGGG- 8 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
546 TAGA-- 6 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
547 TAG-T- 4.375 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
548 TAGG-- 4.27273 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
549 -AGCA- 2.75 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
550 TAG--- 2.10526 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
551 -AG-A- 1.44 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
552 AAG--- 0.875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
553 -AG--- 0.145833 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
554 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
555 type 3SS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
556 center 3 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
557 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
558 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
559 CAGAAA 119 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
560 CAGAGA 114 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
561 CAGATT 100 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
562 CAGAAT 79 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
563 CAGAAC 76 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
564 CAGAT- 66.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
565 CAGTGA 60 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
566 CAGAG- 49 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
567 CAGCAA 40 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
568 CAGAAG 38 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
569 CAGAC- 36.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
570 CAG--A 23.1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
571 CAGTG- 24 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
572 CAG--T 20 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
573 TAGA-A 17.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
574 CAG-TG 16.3333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
575 CAG--C 14.5455 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
576 TAGA-T 12.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
577 CAG--G 8.875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
578 TAGA-C 8.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
579 TAGG-A 8.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
580 TAG-T- 4.33333 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
581 AAGA-- 2.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
582 TAG--- 2.5 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
583 AAG--- 0.6875 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
584 -AG--- 0.15625 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
585 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
|
586 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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587 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
588 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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589 AAA 84633.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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590 AAC 46592.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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591 AAG 60437.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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592 AAT 62516.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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593 ACA 46370.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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594 ACC 24553.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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595 ACG 26490.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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596 ACT 35930.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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597 AGA 58310.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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598 AGC 33692.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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599 AGG 25680.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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600 AGT 32467.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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601 ATA 28413.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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602 ATC 49079.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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603 ATG 55085.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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604 ATT 57612.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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605 CAA 70444.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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606 CAC 32088.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
607 CAG 36967.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
608 CAT 39211.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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609 CCA 41062.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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610 CCC 12109.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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611 CCG 20902.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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612 CCT 16745.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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613 CGA 38937.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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614 CGC 16213.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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615 CGG 19184.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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616 CGT 23512.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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617 CTA 19576.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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618 CTC 36258.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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619 CTG 35452.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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620 CTT 37193.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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621 GAA 78165.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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622 GAC 30372.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
623 GAG 41478.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
624 GAT 54272.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
625 GCA 33687.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
626 GCC 21235.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
627 GCG 14088.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
628 GCT 33925.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
629 GGA 53236.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
630 GGC 16915.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
631 GGG 11380.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
632 GGT 18746.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
633 GTA 18214.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
634 GTC 27126.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
635 GTG 28827.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
636 GTT 37436.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
637 TAA 21016.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
638 TAC 24215.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
639 TAG 11205.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
640 TAT 34251.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
641 TCA 57624.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
642 TCC 32884.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
643 TCG 36367.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
644 TCT 41910.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
645 TGA 53826.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
646 TGC 36079.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
647 TGG 43985.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
648 TGT 36905.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
649 TTA 24513.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
650 TTC 56201.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
651 TTG 51452.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
652 TTT 46581.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
653 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
654 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
655 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
656 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
657 AAA 29214.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
658 AAC 14368.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
659 AAG 21430.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
660 AAT 23711.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
661 ACA 15287.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
662 ACC 7556.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
663 ACG 6113.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
664 ACT 15236.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
665 AGA 13083.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
666 AGC 6073.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
667 AGG 2390.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
668 AGT 9505.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
669 ATA 5289.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
670 ATC 14308.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
671 ATG 19502.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
672 ATT 24404.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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673 CAA 23759.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
674 CAC 6982.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
675 CAG 11123.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
676 CAT 11541.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
677 CCA 22932.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
678 CCC 2834.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
679 CCG 6380.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
680 CCT 7320.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
681 CGA 9565.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
682 CGC 4160.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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683 CGG 2879.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
684 CGT 10219.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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685 CTA 5048.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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686 CTC 11747.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
687 CTG 8079.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
688 CTT 18194.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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689 GAA 35701.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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690 GAC 13432.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
691 GAG 19257.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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changeset
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692 GAT 31475.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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693 GCA 16802.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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694 GCC 10031.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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695 GCG 5651.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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696 GCT 20774.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
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697 GGA 28462.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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698 GGC 4276.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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699 GGG 2708.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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700 GGT 9185.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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701 GTA 7376.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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702 GTC 10825.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
703 GTG 10041.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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704 GTT 20526.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
705 TAA 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
706 TAC 10158.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
707 TAG 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
708 TAT 12776.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
709 TCA 16414.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
710 TCC 7520.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
711 TCG 9109.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
712 TCT 14215.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
713 TGA 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
714 TGC 6122.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
715 TGG 7942.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
716 TGT 8393.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
717 TTA 6535.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
718 TTC 18524.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
719 TTG 15014.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
720 TTT 14468.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
721 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
722 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
723 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
724 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
725 AAA 27124.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
726 AAC 17085.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
727 AAG 28251.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
728 AAT 16214.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
729 ACA 16360.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
730 ACC 5893.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
731 ACG 13413.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
732 ACT 9274.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
733 AGA 18727.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
734 AGC 12003.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
735 AGG 12559.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
736 AGT 8521.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
737 ATA 16240.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
738 ATC 19315.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
739 ATG 28352.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
740 ATT 15596.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
741 CAA 24103.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
742 CAC 13923.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
743 CAG 18346.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
744 CAT 15063.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
745 CCA 10417.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
746 CCC 4057.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
747 CCG 9508.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
748 CCT 3959.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
749 CGA 9972.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
750 CGC 4083.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
751 CGG 7638.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
752 CGT 5560.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
753 CTA 8897.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
754 CTC 15780.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
755 CTG 22899.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
756 CTT 9969.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
757 GAA 18216.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
758 GAC 8305.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
759 GAG 14912.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
760 GAT 9677.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
761 GCA 6876.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
762 GCC 4330.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
763 GCG 5051.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
764 GCT 4374.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
765 GGA 5662.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
766 GGC 3760.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
767 GGG 3721.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
768 GGT 2776.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
769 GTA 6705.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
770 GTC 9254.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
771 GTG 14905.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
772 GTT 6438.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
773 TAA 7340.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
774 TAC 4898.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
775 TAG 5780.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
776 TAT 6230.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
777 TCA 20217.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
778 TCC 9131.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
779 TCG 15798.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
780 TCT 10258.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
781 TGA 18951.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
782 TGC 9200.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
783 TGG 15809.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
784 TGT 8676.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
785 TTA 11663.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
786 TTC 21772.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
787 TTG 29546.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
788 TTT 14611.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
789 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
790 type CDS |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
791 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
792 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
793 AAA 28295.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
794 AAC 15139.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
795 AAG 10756.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
796 AAT 22591.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
797 ACA 14723.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
798 ACC 11104.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
799 ACG 6964.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
800 ACT 11420.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
801 AGA 26500.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
802 AGC 15616.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
803 AGG 10731.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
804 AGT 14441.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
805 ATA 6884.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
806 ATC 15456.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
807 ATG 7231.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
808 ATT 17612.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
809 CAA 22582.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
810 CAC 11183.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
811 CAG 7498.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
812 CAT 12607.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
813 CCA 7713.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
814 CCC 5218.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
815 CCG 5014.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
816 CCT 5466.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
817 CGA 19400.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
818 CGC 7970.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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819 CGG 8667.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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820 CGT 7733.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
821 CTA 5631.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
822 CTC 8731.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
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823 CTG 4474.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
824 CTT 9030.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
825 GAA 24248.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
826 GAC 8635.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
827 GAG 7309.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
828 GAT 13120.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
829 GCA 10009.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
830 GCC 6874.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
831 GCG 3386.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
832 GCT 8777.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
833 GGA 19112.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
834 GGC 8879.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
835 GGG 4951.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
836 GGT 6785.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
837 GTA 4133.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
838 GTC 7047.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
839 GTG 3881.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
840 GTT 10472.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
841 TAA 13676.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
842 TAC 9159.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
843 TAG 5425.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
844 TAT 15245.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
845 TCA 20993.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
846 TCC 16233.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
847 TCG 11460.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
848 TCT 17437.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
849 TGA 34875.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
850 TGC 20757.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
851 TGG 20234.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
852 TGT 19836.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
853 TTA 6315.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
854 TTC 15905.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
855 TTG 6892.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
856 TTT 17502.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
857 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
858 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
859 phase all |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
860 93.3478 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
861 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
862 phase 0 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
863 194.143 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
864 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
865 phase 1 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
866 362.18 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
867 type Intron_Corr_Term |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
868 phase 2 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
869 357.052 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
870 type Intron_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
871 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
872 A 572525.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
873 C 267017.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
874 G 250100.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
875 T 588809.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
876 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
877 type Pyrimidine_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
878 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
879 A 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
880 C 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
881 G 0.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
882 T 22799.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
883 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
884 type Spacer_emission |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
885 begin consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
886 A 117.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
887 C 183.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
888 G 73.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
889 T 172.000000 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
890 end consensus |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
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|
891 type Central_Intron_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
892 0.994723 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
893 type Pyrimidine_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
894 0.719098 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
895 type No_Spacer_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
896 0.687177 |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
897 type Spacer_Stay_Prob |
5b9a38ec4a39
First commit of old repositories
osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
parents:
diff
changeset
|
898 0.163615 |