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comparison orthologs/ucsb_hamster/lib/wisecfg/worm.gf @ 0:5b9a38ec4a39 draft default tip

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First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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-1:000000000000 0:5b9a38ec4a39
1 # Splice sites and intron regions information for GeneWise-21
2 # Tue Jan 14 16:50:39 IST 1997
3 # Created by Mor Amitai (mor@compugen.co.il)
4 # dataset : C.Elegans data from the Sanger Centre. given by Ewan Birney
5 # preliminary results. For Ewan's use only
6 # Consensi are read from top down. The value, for a sequence,
7 # is the number in the line of the first consensus that
8 # matches the sequence.
9 # Note: the set of sequences that are represented by a consensus
10 # are all the sequences that match this consensus and none of the
11 # previous consensi
12 #
13 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of
14 # occurrences of each sequence in the database.
15 # In case of a consensus this is the number of occurrences of sequences
16 # that are represented by the consensus in the database divided by the
17 # number of sequences that are represented by the consensus.
18 # *stay_prob is the probability of the transition from the state to itself.
19 # No_Spacer_Prob is the probability of transition from Pyrimidine directly
20 # to 3SS (no spacer).
21 type 5SS
22 center 3
23 phase all
24 begin consensus
25 AAAGTGAGTT 61
26 GATGTAAGTT 51
27 A-TGTAAGTT 28.25
28 -AAGTGAGTT 28
29 -AAGTAAGTT 24.75
30 A-AGTGAGTT 22.3333
31 AA-GTGAGTT 22
32 TTGGT-AGTT 20.25
33 AAGGTTTGT- 19.75
34 -AGGTAATTT 19.25
35 T-TGTAAGTT 19
36 A-AGTAAGTT 18.3333
37 AT-GTGAGTT 17
38 GA-GTGAGTT 17
39 -AGGTAAATT 16.75
40 A-GGTTAGTT 16.75
41 AAGGTAA-AA 13.5
42 AAGGTAA-AT 13.25
43 T--GTAAGTT 10.4
44 -A-GTAAGTT 11.1429
45 -T-GTAAGTT 10.3
46 --GGTGAGTT 10.1667
47 --AGTGAGTT 9.22222
48 -C-GTAAGTT 8.8
49 -T-GTGAGTT 8.33333
50 --GGTTAGTT 8
51 AA-GTAAG-A 7.73333
52 -AGGTTTGT- 7.41667
53 -AGGTGAG-A 7.0625
54 CAGGTAA-A- 6.5625
55 AA-GTA-GTT 6.5
56 -A-GTTAGTT 6.41667
57 -G-GTAAGTT 6.4
58 -AGGTATTT- 6
59 AA-GTAAG-T 5.54545
60 -AGGTAAA-A 5.5
61 -AAGTAAGT- 5.45455
62 -A-GTAAGAA 5.36364
63 --GGTATGTT 5.26667
64 -TGGTGAGT- 5.25
65 -AAGTGAGT- 5.16667
66 -ATGTAAGT- 5.09091
67 AAGGT-AGT- 5.09091
68 -AGGTGAGA- 4.75
69 -TGGTAAGT- 4.58333
70 -AGGTAATT- 4.5
71 -AGGTATGT- 4.41667
72 --GGTAAGAT 4.28571
73 --GGTAAGAA 4.25
74 ---GTGAGTT 4.2
75 --GGTTGGTT 3.5625
76 -AGGTTTGA- 3.4375
77 A--GTAAGT- 3.28571
78 AAGGTAT-A- 3.125
79 -AGGT-AGT- 2.61111
80 --GGTAA-TT 2.575
81 T--GTAAGT- 2.5
82 --GGTT-GTT 2.42857
83 -A-GTA-GTT 2.42424
84 -AGGTAAG-- 2.23529
85 ---GTTAGTT 2.16667
86 ---GTAAGAT 2.04444
87 A--GTGAGT- 1.97436
88 A--GTA-GTT 1.9697
89 -AGGTA--TT 1.84375
90 -AGGTAA-A- 1.82143
91 C--GTAAGT- 1.80556
92 AA-GTGAG-- 1.7619
93 AAGGTA---A 1.7234
94 --GGTGAG-A 1.64286
95 G--GTAAGT- 1.63889
96 T--GTA-GTT 1.63636
97 -TGGTAAG-- 1.625
98 CAGGTA---A 1.54902
99 --GGTGAG-T 1.54762
100 AAGGTA---T 1.52632
101 AAGGTT-G-- 1.46
102 AA-GT-A-TT 1.45833
103 CAGGTA---T 1.42857
104 A--GTAAGA- 1.37838
105 ---GTGAGTG 1.35897
106 -AGGTG-GT- 1.16667
107 --GGTATG-A 1.07407
108 -AGGTT-TT- 0.952381
109 -A-GTAAG-- 0.794118
110 -AGGTAA--- 0.790698
111 --GGTA-GT- 0.734375
112 -A-GT-AGT- 0.731183
113 --GGT-AGT- 0.696629
114 -AGGTA-G-- 0.66
115 ---GTAAG-A 0.643478
116 -AGGT-AG-- 0.59375
117 --GGTA-G-T 0.58871
118 --GGTAA--A 0.583333
119 AA-GTA-G-- 0.555556
120 -AGGTAT--- 0.532787
121 -A-GT--GTT 0.525
122 --GGTT-GT- 0.515873
123 -A-GTGAG-- 0.481481
124 --GGTAA-A- 0.466667
125 -AGGT-A-T- 0.466667
126 -A-GTAA-T- 0.407407
127 ---GTGAG-A 0.4
128 -AGGTTT--- 0.39
129 A-GGTA--T- 0.362319
130 ---GTATGT- 0.326797
131 ---GTAAG-- 0.221854
132 -AAGTA--A- 0.219298
133 ---GT--GTT 0.209402
134 --GGTA-G-- 0.1875
135 --GGT-AG-- 0.155556
136 --GGTA--T- 0.15493
137 -AGGT---A- 0.1375
138 A--GTAA--- 0.116838
139 -A-GTA--T- 0.109053
140 ---GTT-GT- 0.0944444
141 -AAGT-A--- 0.0761905
142 ---GT--GAT 0.0670886
143 -AGGT----- 0.0541575
144 --GGTA---- 0.0411523
145 ---GTA-G-- 0.037037
146 ---GTAA--- 0.0363757
147 ---GT-A-T- 0.0309423
148 A--GT----T 0.0201761
149 ---GTG-G-- 0.0192593
150 ---GT--G-- 0.00953471
151 ---GT---T- 0.0090535
152 ---GT----- 0.00283019
153 end consensus
154 type 5SS
155 center 3
156 phase 0
157 begin consensus
158 GATGTAAGTT 43
159 AA-GTGAGTT 15.25
160 A-TGTAAGTT 14.75
161 AAGGTTTGT- 13.5
162 GA-GTGAGTT 11.25
163 AAGGTAA-TT 11
164 CAGGTAA-TT 10.25
165 A-AGTAAGTT 9.5
166 -AGGTTAGTT 9
167 -TGGTGAGTT 9
168 AAGGTAA-AT 8.75
169 GC-GTAAGTT 8.5
170 T-TGTAAGTT 8.5
171 -AGGTATTTT 7.75
172 A--GTGAGTT 5.90909
173 --GGTAAGTT 4.92308
174 -A-GTAAGTT 5.25
175 --GGTTAGTT 4.66667
176 AAGGTAA--A 4.5
177 -AGGTTTGT- 4.25
178 --GGTGAGTT 4.125
179 -A-GTAAGAA 3.73333
180 AAGGTT-GT- 3.54545
181 -AGGTGAGA- 3.5
182 -ATGTAAGT- 3.41667
183 --GGTATGTT 3.3125
184 GAGGTAA-T- 3.26667
185 CA-GT-AGTT 3.2
186 -AGGTAAAA- 3.14286
187 -TGGTGAGT- 2.75
188 CAGGTAA--A 2.71429
189 -AGGTGAG-A 2.66667
190 -ATGTA-GTT 2.66667
191 AAGGTAT-T- 2.5
192 AAGGTT-GA- 2.4375
193 CAGGTAT-T- 2.35714
194 ---GTAAGTT 2.29167
195 --GGTAAGAT 2.26667
196 ---GTGAGTT 1.7
197 -A-GT-AGTT 1.47619
198 AA-GTAAG-- 1.40816
199 -AGGTGAG-- 1.40625
200 --TGTAAGT- 1.38889
201 --GGTAAG-A 1.32075
202 --GGTT-GTT 1.21429
203 -A-GTGAGT- 1.16667
204 --GGTAA-TT 1.12821
205 AAGGTAT--- 1.125
206 A--GTA-GTT 1.09756
207 CAGGTA---T 1.05556
208 AAGGTA---T 1
209 CAGGT--GT- 1
210 GAGGTA--T- 0.956522
211 A-GGTA-GT- 0.871795
212 AAGGT-A-T- 0.866667
213 CAGGTA--A- 0.857143
214 GA-GTAAG-- 0.829787
215 -AGGTTTG-- 0.818182
216 A--GTAAGA- 0.809524
217 --GGTGAG-A 0.795455
218 -A-GTGAGA- 0.75
219 -TGGTA-G-T 0.74
220 GAGGTAT--- 0.729167
221 --GGT-AGTG 0.695652
222 --AGTAAG-A 0.607843
223 -AGGTTTT-- 0.546875
224 ---GT-AGTT 0.488095
225 ---GTAAGT- 0.45
226 ---GTA-GTT 0.415929
227 ---GTGAGT- 0.413793
228 AAGGTA---- 0.40566
229 CAGGTA---- 0.375
230 GAGGTA---- 0.367188
231 -AGGTT-G-- 0.337838
232 --GGT-AG-T 0.289855
233 -A-GT-A-TT 0.28655
234 ---GTAAG-T 0.282051
235 --GGTAA-T- 0.264957
236 --GGTATG-- 0.264368
237 AA-GT--GT- 0.259887
238 --GGTAA-A- 0.244186
239 A--GTAA--A 0.212644
240 -ATGTA-G-- 0.171123
241 -A-GTGA--A 0.15493
242 --GGT--GT- 0.107914
243 -AGGTT---- 0.0951684
244 --GGTA-G-- 0.0941176
245 -A-GT-AG-- 0.0711297
246 --GGTA--T- 0.0663812
247 -AAGTA---- 0.0590164
248 ---GTT-GT- 0.0509259
249 --TGTAA--- 0.0499376
250 -AGGTG---- 0.0425532
251 --GGTA---- 0.0223793
252 ---GT-AG-- 0.0221502
253 ---GTA-G-- 0.0173088
254 ---GT-A-T- 0.0157715
255 A--GT----T 0.0103437
256 ---GT--G-- 0.00594251
257 ---GT---T- 0.00467836
258 ---GT----- 0.00116399
259 end consensus
260 type 5SS
261 center 3
262 phase 1
263 begin consensus
264 A-AGTGAGTT 9.25
265 TT-GTAAGTT 9.25
266 -TGGTGAGTT 8.25
267 A-TGTAAGTT 8
268 -T-GTAAGTT 5.09091
269 --AGTGAGTT 4.33333
270 A--GTAAGTT 3.66667
271 --GGTTAGTT 3.125
272 -AGGTAA-TT 2.66667
273 TTGGTAAG-- 2.2
274 --GGTTTGTT 2.1875
275 CA-GTAAGT- 2.06667
276 T--GTAAGTT 2.81818
277 --GGTGAGTA 1.9375
278 ---GTGAGTT 1.70455
279 -AGGTAA-A- 1.17188
280 A--GTAAGT- 1.16667
281 --AGT-AGTT 1
282 -TGGTAAG-- 0.928571
283 AA-GTAAG-- 0.909091
284 --GGTA-GTT 0.884615
285 ---GTAAGTA 0.878049
286 --GGTGAGA- 0.796875
287 A--GTGAGT- 0.727273
288 AAGGTAT--- 0.714286
289 -TGGTT-GT- 0.696429
290 --AGTA-GTT 0.6875
291 ---GTAAGAT 0.679245
292 -AGGTT-GT- 0.660714
293 ---GTAAGT- 0.521739
294 --GGTATG-A 0.516667
295 -AGGTAA--- 0.403846
296 --GGTGAG-- 0.342105
297 --GGTA--TT 0.316384
298 A--GT--GTT 0.283333
299 ---GTAAG-A 0.245283
300 -AGGTA-G-- 0.228758
301 -TGGTA-G-- 0.207317
302 -A-GTGAG-- 0.19883
303 -AGGTT-G-- 0.1875
304 -TGGTAA--- 0.183333
305 -AGGTG--T- 0.130802
306 -AGGTA---- 0.109091
307 ---GT-AGT- 0.103792
308 ---GTAAG-- 0.103774
309 ---GT--GTT 0.0700637
310 -A-GTA--T- 0.0614035
311 -AGGTT---- 0.0442708
312 ---GTATG-- 0.0401554
313 --GGTA---- 0.0193694
314 --GGT--G-- 0.0173797
315 A--GT-A--- 0.0144654
316 ---GT-A--- 0.0048218
317 ---GT--G-- 0.00395005
318 ---GT----- 0.00155651
319 end consensus
320 type 5SS
321 center 3
322 phase 2
323 begin consensus
324 -AAGTGAGTT 17.25
325 -AAGTAAGTT 13.75
326 -GAGTGAGTT 8.5
327 TG-GTAAGTT 7.75
328 A--GTAAGTT 4.26667
329 T--GTAAGTT 4.09091
330 -A-GTGAGTT 3.58333
331 T--GTGAGTT 3.09091
332 -AAGTAAGT- 3.08333
333 -AAGTGAGT- 3
334 A--GTGAGTT 2.90909
335 -A-GTTAGTT 2.6875
336 -AGGTAA-TT 2.5
337 -A-GTAAGAA 2.4375
338 -A-GTAAGAT 2.1875
339 -A-GTATGTT 2.125
340 A--GTAAGT- 1.24444
341 --TGTAAGT- 1.13636
342 --AGT-AGTT 1.13158
343 -AGGTGAG-- 1.03333
344 -AGGTAA--A 0.983051
345 -AGGTT-GT- 0.966667
346 --CGT-AGTT 0.857143
347 -G-GTA-GTT 0.7
348 --GGTAAGA- 0.660714
349 --GGTT-GTT 0.645833
350 -AGGTA-TT- 0.642857
351 T--GT-AGTA 0.581818
352 ---GTAAGT- 0.5
353 ---GTA-GTT 0.429688
354 ---GTGAGT- 0.427711
355 -A-GTAAG-- 0.381944
356 -AGGTAA--- 0.298387
357 -AGGTA-G-- 0.272222
358 A--GTAAG-- 0.25
359 -A-GT--GTT 0.228571
360 -AAGTA-G-- 0.2
361 ---GTAA-TT 0.194444
362 ---GTGAG-A 0.194444
363 ---GTTAGT- 0.19209
364 -AGGTTT--- 0.158333
365 ---GT-AGAT 0.153488
366 -AGGTA---- 0.100379
367 ---GTAAG-- 0.097561
368 --GGTAA--- 0.0759259
369 -A-GT-A-T- 0.0700549
370 --GGT--GT- 0.0628019
371 AA-GTA---- 0.052381
372 ---GTATG-- 0.0413437
373 --GGT--G-- 0.0202815
374 -A-GT-A--- 0.0149254
375 ---GT---TT 0.0146813
376 ---GT---T- 0.00532449
377 ---GTA---- 0.00401891
378 ---GT----- 0.00131086
379 end consensus
380 type 3SS
381 center 3
382 phase all
383 begin consensus
384 CAGAAA 372
385 CAGATT 316
386 CAGATG 290
387 CAGATC 263
388 CAGGAA 253
389 CAGAAT 246
390 CAGAAC 221
391 CAGGTT 218
392 CAGATA 215
393 CAGAGA 200
394 CAGGAT 175
395 CAGAAG 167
396 CAGACA 160
397 CAGCAA 158
398 CAGACT 151
399 CAGGT- 148.667
400 CAGGAG 139
401 CAGCTC 129
402 CAGAGT 127
403 CAGGCT 125
404 CAGGCA 124
405 CAGCTT 116
406 CAG-TC 115
407 CAGAGC 112
408 CAGGGA 112
409 CAGACG 109
410 CAGCCA 106
411 CAG-TT 100
412 CAGGAC 100
413 CAGCTG 96
414 CAGCAT 95
415 CAGACC 90
416 CAGTGA 89
417 CAGCTA 85
418 CAGGGT 85
419 CAGCAC 80
420 TAGAAA 80
421 CAGGCC 77
422 CAG-TG 73
423 CAGAGG 72
424 CAG-CA 70
425 TAGGAA 66
426 CAGGCG 65
427 CAG-AC 62
428 CAGTTA 62
429 CAG-AT 61
430 CAGTG- 60.3333
431 CAGCGT 55
432 TAGGTT 53
433 TAGAAT 51
434 CAGCCG 50
435 TAGAT- 49.25
436 CAGTC- 43
437 TAGGT- 40.6667
438 CAGC-- 37
439 TAGG-T 32.3333
440 TAGAC- 24.75
441 TAG-AC 19.25
442 TAG-CA 19
443 TAG-GA 17.5
444 TAGCT- 16
445 -AGGGC 15
446 AAGGT- 14.25
447 TAG-A- 13
448 AAGAT- 12.5
449 TAG--T 10
450 TAG--- 7.9375
451 AAGA-- 5.25
452 AAGG-- 4.63636
453 AAG--- 1.84375
454 -AG--- 1.60606
455 end consensus
456 type 3SS
457 center 3
458 phase 0
459 begin consensus
460 CAGAAA 167
461 CAGATT 160
462 CAGGTT 160
463 CAGATG 145
464 CAGATC 143
465 CAGGAA 139
466 CAGAAT 113
467 CAGGAT 111
468 CAGAAC 100
469 CAGGT- 86.3333
470 CAGGCT 82
471 CAGGCA 80
472 CAGA-A 79.3333
473 CAGCTT 79
474 CAGGGA 79
475 CAGGAG 77
476 CAGCAA 75
477 CAGCTC 72
478 CAGACT 70
479 CAGCCA 64
480 CAGGGT 59
481 CAGAAG 58
482 CAG-TC 57
483 CAGAGT 49
484 CAG-AC 48.6667
485 CAGGCC 48
486 CAG-TT 45
487 CAGACC 45
488 TAGGAA 41
489 CAGAGC 39
490 CAGCAT 34
491 CAGGCG 33
492 CAGTTG 33
493 TAGAAA 33
494 TAGGAT 33
495 TAGGT- 26.75
496 CAG-TA 26
497 TAGAT- 23.25
498 CAGT-T 21.6667
499 CAG-C- 19.7143
500 CAG-GC 16.6667
501 CAGC-- 15.2
502 TAGAA- 14.6667
503 TAGG-- 12.2
504 TAGAC- 10
505 AAGGT- 9.5
506 TAG-T- 6.375
507 TAG--A 5.85714
508 CAG-GG 10
509 TAG--T 4.57143
510 AAGG-- 3.16667
511 AAGA-- 2.875
512 -AG--- 0.575221
513 end consensus
514 type 3SS
515 center 3
516 phase 1
517 begin consensus
518 CAGATG 88
519 CAGAAA 86
520 CAGGAA 80
521 CAGGTG 60
522 CAGAA- 56.6667
523 CAGAT- 56.3333
524 CAGCTG 55
525 CAGACG 53
526 CAGGAG 52
527 CAGCAA 43
528 CAGGAT 43
529 CAG-TC 37.3333
530 CAGACT 33
531 CAG-T- 26.8571
532 CAGT-A 23.6667
533 CAG-CA 24.6667
534 CAG-AT 24
535 CAGAG- 22
536 CAG-CG 21.3333
537 CAGTG- 19.6667
538 CAG-AC 19
539 CAG-CT 15
540 TAG-AA 12.75
541 TAGAT- 12.5
542 CAG-CC 11.25
543 CAGCG- 11.75
544 TAGGT- 9.25
545 CAGGG- 8
546 TAGA-- 6
547 TAG-T- 4.375
548 TAGG-- 4.27273
549 -AGCA- 2.75
550 TAG--- 2.10526
551 -AG-A- 1.44
552 AAG--- 0.875
553 -AG--- 0.145833
554 end consensus
555 type 3SS
556 center 3
557 phase 2
558 begin consensus
559 CAGAAA 119
560 CAGAGA 114
561 CAGATT 100
562 CAGAAT 79
563 CAGAAC 76
564 CAGAT- 66.3333
565 CAGTGA 60
566 CAGAG- 49
567 CAGCAA 40
568 CAGAAG 38
569 CAGAC- 36.5
570 CAG--A 23.1
571 CAGTG- 24
572 CAG--T 20
573 TAGA-A 17.5
574 CAG-TG 16.3333
575 CAG--C 14.5455
576 TAGA-T 12.5
577 CAG--G 8.875
578 TAGA-C 8.5
579 TAGG-A 8.5
580 TAG-T- 4.33333
581 AAGA-- 2.5
582 TAG--- 2.5
583 AAG--- 0.6875
584 -AG--- 0.15625
585 end consensus
586 type CDS
587 phase all
588 begin consensus
589 AAA 84633.000000
590 AAC 46592.000000
591 AAG 60437.000000
592 AAT 62516.000000
593 ACA 46370.000000
594 ACC 24553.000000
595 ACG 26490.000000
596 ACT 35930.000000
597 AGA 58310.000000
598 AGC 33692.000000
599 AGG 25680.000000
600 AGT 32467.000000
601 ATA 28413.000000
602 ATC 49079.000000
603 ATG 55085.000000
604 ATT 57612.000000
605 CAA 70444.000000
606 CAC 32088.000000
607 CAG 36967.000000
608 CAT 39211.000000
609 CCA 41062.000000
610 CCC 12109.000000
611 CCG 20902.000000
612 CCT 16745.000000
613 CGA 38937.000000
614 CGC 16213.000000
615 CGG 19184.000000
616 CGT 23512.000000
617 CTA 19576.000000
618 CTC 36258.000000
619 CTG 35452.000000
620 CTT 37193.000000
621 GAA 78165.000000
622 GAC 30372.000000
623 GAG 41478.000000
624 GAT 54272.000000
625 GCA 33687.000000
626 GCC 21235.000000
627 GCG 14088.000000
628 GCT 33925.000000
629 GGA 53236.000000
630 GGC 16915.000000
631 GGG 11380.000000
632 GGT 18746.000000
633 GTA 18214.000000
634 GTC 27126.000000
635 GTG 28827.000000
636 GTT 37436.000000
637 TAA 21016.000000
638 TAC 24215.000000
639 TAG 11205.000000
640 TAT 34251.000000
641 TCA 57624.000000
642 TCC 32884.000000
643 TCG 36367.000000
644 TCT 41910.000000
645 TGA 53826.000000
646 TGC 36079.000000
647 TGG 43985.000000
648 TGT 36905.000000
649 TTA 24513.000000
650 TTC 56201.000000
651 TTG 51452.000000
652 TTT 46581.000000
653 end consensus
654 type CDS
655 phase 0
656 begin consensus
657 AAA 29214.000000
658 AAC 14368.000000
659 AAG 21430.000000
660 AAT 23711.000000
661 ACA 15287.000000
662 ACC 7556.000000
663 ACG 6113.000000
664 ACT 15236.000000
665 AGA 13083.000000
666 AGC 6073.000000
667 AGG 2390.000000
668 AGT 9505.000000
669 ATA 5289.000000
670 ATC 14308.000000
671 ATG 19502.000000
672 ATT 24404.000000
673 CAA 23759.000000
674 CAC 6982.000000
675 CAG 11123.000000
676 CAT 11541.000000
677 CCA 22932.000000
678 CCC 2834.000000
679 CCG 6380.000000
680 CCT 7320.000000
681 CGA 9565.000000
682 CGC 4160.000000
683 CGG 2879.000000
684 CGT 10219.000000
685 CTA 5048.000000
686 CTC 11747.000000
687 CTG 8079.000000
688 CTT 18194.000000
689 GAA 35701.000000
690 GAC 13432.000000
691 GAG 19257.000000
692 GAT 31475.000000
693 GCA 16802.000000
694 GCC 10031.000000
695 GCG 5651.000000
696 GCT 20774.000000
697 GGA 28462.000000
698 GGC 4276.000000
699 GGG 2708.000000
700 GGT 9185.000000
701 GTA 7376.000000
702 GTC 10825.000000
703 GTG 10041.000000
704 GTT 20526.000000
705 TAA 0.000000
706 TAC 10158.000000
707 TAG 0.000000
708 TAT 12776.000000
709 TCA 16414.000000
710 TCC 7520.000000
711 TCG 9109.000000
712 TCT 14215.000000
713 TGA 0.000000
714 TGC 6122.000000
715 TGG 7942.000000
716 TGT 8393.000000
717 TTA 6535.000000
718 TTC 18524.000000
719 TTG 15014.000000
720 TTT 14468.000000
721 end consensus
722 type CDS
723 phase 1
724 begin consensus
725 AAA 27124.000000
726 AAC 17085.000000
727 AAG 28251.000000
728 AAT 16214.000000
729 ACA 16360.000000
730 ACC 5893.000000
731 ACG 13413.000000
732 ACT 9274.000000
733 AGA 18727.000000
734 AGC 12003.000000
735 AGG 12559.000000
736 AGT 8521.000000
737 ATA 16240.000000
738 ATC 19315.000000
739 ATG 28352.000000
740 ATT 15596.000000
741 CAA 24103.000000
742 CAC 13923.000000
743 CAG 18346.000000
744 CAT 15063.000000
745 CCA 10417.000000
746 CCC 4057.000000
747 CCG 9508.000000
748 CCT 3959.000000
749 CGA 9972.000000
750 CGC 4083.000000
751 CGG 7638.000000
752 CGT 5560.000000
753 CTA 8897.000000
754 CTC 15780.000000
755 CTG 22899.000000
756 CTT 9969.000000
757 GAA 18216.000000
758 GAC 8305.000000
759 GAG 14912.000000
760 GAT 9677.000000
761 GCA 6876.000000
762 GCC 4330.000000
763 GCG 5051.000000
764 GCT 4374.000000
765 GGA 5662.000000
766 GGC 3760.000000
767 GGG 3721.000000
768 GGT 2776.000000
769 GTA 6705.000000
770 GTC 9254.000000
771 GTG 14905.000000
772 GTT 6438.000000
773 TAA 7340.000000
774 TAC 4898.000000
775 TAG 5780.000000
776 TAT 6230.000000
777 TCA 20217.000000
778 TCC 9131.000000
779 TCG 15798.000000
780 TCT 10258.000000
781 TGA 18951.000000
782 TGC 9200.000000
783 TGG 15809.000000
784 TGT 8676.000000
785 TTA 11663.000000
786 TTC 21772.000000
787 TTG 29546.000000
788 TTT 14611.000000
789 end consensus
790 type CDS
791 phase 2
792 begin consensus
793 AAA 28295.000000
794 AAC 15139.000000
795 AAG 10756.000000
796 AAT 22591.000000
797 ACA 14723.000000
798 ACC 11104.000000
799 ACG 6964.000000
800 ACT 11420.000000
801 AGA 26500.000000
802 AGC 15616.000000
803 AGG 10731.000000
804 AGT 14441.000000
805 ATA 6884.000000
806 ATC 15456.000000
807 ATG 7231.000000
808 ATT 17612.000000
809 CAA 22582.000000
810 CAC 11183.000000
811 CAG 7498.000000
812 CAT 12607.000000
813 CCA 7713.000000
814 CCC 5218.000000
815 CCG 5014.000000
816 CCT 5466.000000
817 CGA 19400.000000
818 CGC 7970.000000
819 CGG 8667.000000
820 CGT 7733.000000
821 CTA 5631.000000
822 CTC 8731.000000
823 CTG 4474.000000
824 CTT 9030.000000
825 GAA 24248.000000
826 GAC 8635.000000
827 GAG 7309.000000
828 GAT 13120.000000
829 GCA 10009.000000
830 GCC 6874.000000
831 GCG 3386.000000
832 GCT 8777.000000
833 GGA 19112.000000
834 GGC 8879.000000
835 GGG 4951.000000
836 GGT 6785.000000
837 GTA 4133.000000
838 GTC 7047.000000
839 GTG 3881.000000
840 GTT 10472.000000
841 TAA 13676.000000
842 TAC 9159.000000
843 TAG 5425.000000
844 TAT 15245.000000
845 TCA 20993.000000
846 TCC 16233.000000
847 TCG 11460.000000
848 TCT 17437.000000
849 TGA 34875.000000
850 TGC 20757.000000
851 TGG 20234.000000
852 TGT 19836.000000
853 TTA 6315.000000
854 TTC 15905.000000
855 TTG 6892.000000
856 TTT 17502.000000
857 end consensus
858 type Intron_Corr_Term
859 phase all
860 93.3478
861 type Intron_Corr_Term
862 phase 0
863 194.143
864 type Intron_Corr_Term
865 phase 1
866 362.18
867 type Intron_Corr_Term
868 phase 2
869 357.052
870 type Intron_emission
871 begin consensus
872 A 572525.000000
873 C 267017.000000
874 G 250100.000000
875 T 588809.000000
876 end consensus
877 type Pyrimidine_emission
878 begin consensus
879 A 0.000000
880 C 0.000000
881 G 0.000000
882 T 22799.000000
883 end consensus
884 type Spacer_emission
885 begin consensus
886 A 117.000000
887 C 183.000000
888 G 73.000000
889 T 172.000000
890 end consensus
891 type Central_Intron_Stay_Prob
892 0.994723
893 type Pyrimidine_Stay_Prob
894 0.719098
895 type No_Spacer_Prob
896 0.687177
897 type Spacer_Stay_Prob
898 0.163615