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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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1 <tool id="raxify_fasta" name="Raxify_FASTA" version="1.0">
2 <description>Alters FASTA headers for more consistent use in FASTA2PHYLIPe for
3 RAxML</description>
4 <command interpreter="perl">
5 raxify_fasta.pl $infile $outfile
6 </command>
7 <inputs>
8 <param name="infile" type="data" format="fasta" label="Input File" help="FASTA file to
9 convert" />
10 </inputs>
11 <outputs>
12 <data format="fasta" name="outfile" label="${tool.name} on ${on_string}: Out file" />
13 </outputs>
14 <help>
15 **What it does**
16
17 Truncates FASTA header to 50 characters then replaces spaces, pipes and periods with
18 underscores.
19
20 ------
21
22 **Inputs**
23
24 FASTA
25
26 ------
27
28 **Outputs**
29
30 PHYLIP extended
31
32 ------
33
34 **Additional Information**
35
36 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the
37 osiris_phylogenetics site at bitbucket.org
38
39 ------
40
41 **Citations**
42
43 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use
44 of this tool in a publication, please consider citing the following.
45
46 Current Osiris Citation is here
47
48 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
49 </help>
50 </tool>