<tool id="raxify_fasta" name="Raxify_FASTA" version="1.0">
    <description>Alters FASTA headers for more consistent use in FASTA2PHYLIPe for 
RAxML</description>
    <command interpreter="perl">
		raxify_fasta.pl $infile $outfile
    </command>
    <inputs>
	    <param name="infile" type="data" format="fasta" label="Input File" help="FASTA file to 
convert" />
    </inputs>
    <outputs>
	<data format="fasta" name="outfile" label="${tool.name} on ${on_string}: Out file" />
    </outputs>
    <help>
**What it does**

Truncates FASTA header to 50 characters then replaces spaces, pipes and periods with 
underscores.

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**Inputs**

FASTA

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**Outputs**

PHYLIP extended

------

**Additional Information**

Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the 
osiris_phylogenetics site at bitbucket.org

------

**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use 
of this tool in a publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
    </help>
</tool>