Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison phyloconversion/tnt2phytab.xml @ 0:5b9a38ec4a39 draft default tip
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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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1 <tool id="tnt2table" name="TNT2PHYTAB" version="1.0"> | |
2 <description>Converts TNT text output from MorphoBank into PHYTAB format.</description> | |
3 <command interpreter="perl">tnt2phytab.pl $input > out</command> | |
4 <inputs> | |
5 <param name="input" format="txt" type="data" label="Input file" /> | |
6 </inputs> | |
7 | |
8 <outputs> | |
9 <data from_work_dir="out" format="tabular" /> | |
10 </outputs> | |
11 <help> | |
12 **What it does** | |
13 | |
14 TNT2PHYTAB takes an input TNT text file generated in Morphobank and converts it to PHYTAB file format. | |
15 | |
16 ------ | |
17 | |
18 **Inputs** | |
19 | |
20 TNT text file generated in MorphoBank. | |
21 | |
22 Link to MorphoBank: http://www.morphobank.org/ | |
23 | |
24 ------ | |
25 | |
26 **Outputs** | |
27 | |
28 PHYTAB file format. Description: http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html | |
29 | |
30 ------ | |
31 | |
32 **Additional Information** | |
33 | |
34 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the | |
35 osiris_phylogenetics site at bitbucket.org | |
36 | |
37 ------ | |
38 | |
39 **Citations** | |
40 | |
41 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a | |
42 publication, please consider citing the following. | |
43 | |
44 Current Osiris Citation is here | |
45 | |
46 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html | |
47 | |
48 Information about MorphoBank is here. | |
49 | |
50 http://www.morphobank.org/index.php/About/Index | |
51 </help> | |
52 | |
53 </tool> |