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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 <tool id="tnt2table" name="TNT2PHYTAB" version="1.0">
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2 <description>Converts TNT text output from MorphoBank into PHYTAB format.</description>
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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3 <command interpreter="perl">tnt2phytab.pl $input &gt; out</command>
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4 <inputs>
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5 <param name="input" format="txt" type="data" label="Input file" />
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6 </inputs>
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7
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8 <outputs>
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9 <data from_work_dir="out" format="tabular" />
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10 </outputs>
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11 <help>
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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12 **What it does**
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13
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14 TNT2PHYTAB takes an input TNT text file generated in Morphobank and converts it to PHYTAB file format.
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15
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16 ------
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17
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18 **Inputs**
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19
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20 TNT text file generated in MorphoBank.
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21
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22 Link to MorphoBank: http://www.morphobank.org/
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23
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24 ------
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25
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26 **Outputs**
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27
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28 PHYTAB file format. Description: http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html
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29
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30 ------
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31
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32 **Additional Information**
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33
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34 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the
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35 osiris_phylogenetics site at bitbucket.org
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36
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37 ------
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38
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39 **Citations**
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40
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41 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a
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42 publication, please consider citing the following.
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43
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44 Current Osiris Citation is here
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45
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46 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
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47
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48 Information about MorphoBank is here.
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49
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50 http://www.morphobank.org/index.php/About/Index
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51 </help>
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52
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53 </tool>