Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
diff alignment/mview.xml @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/alignment/mview.xml Tue Mar 11 12:19:13 2014 -0700 @@ -0,0 +1,59 @@ +<tool id="mview" name="MView" version="1.0"> + <description>View multiple sequence alignment in HTML</description> + <requirements><requirement type="package">mview</requirement></requirements> + <command interpreter="perl">mview.pl $input $dna > $output </command> + <inputs> + <param format="fasta" name="input" type="data" label="Aligned fasta file to visualize" /> + <param name="dna" type="select" label="Data type"> + <option value="DNA">DNA</option> + <option value="Protein">Protein</option> + </param> + + </inputs> + <outputs> + <data format="html" name="output" label="${tool.name} on ${on_string}: Alignment" /> + </outputs> +<help> +**What it does** + +From the MView website: http://bio-mview.sourceforge.net/ + +MView reformats the results of a sequence database search or a multiple alignment adding optional HTML markup to control coloring and webpage layout. + +------ + +**Inputs** + +FASTA + +------ + +**Outputs** + +HTML + +------- + +**Additional Information** + +Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org + +------- + +**Citations** + +This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a publication, please consider +citing the following. + +Current Osiris Citation is here + +http://osiris-phylogenetics.blogspot.com/2012/10/citation.html + +Additional Citations for this tool + +Citation for MView: + +Brown, N.P., Leroy C., Sander C. (1998). MView: A Web compatible database search or multiple alignment viewer. Bioinformatics. 14(4):380-381. + +</help> +</tool>