Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

<tool id="fasta2phylip-e" name="FASTA2PHYLIP-E" version="1.0">
    <description>Convert Aligned FASTA to PHYLIP extended</description>
    <command interpreter="perl">
	seqConverterG.pl -d$input $format -O$output
    </command>
    <inputs>
	    <param name="input" type="data" format="fasta" label="Input Fasta File" help="Aligned fasta" />
    <param name="format" type="select" label="Output Format">
      <option value="-ope">Phylip extended</option>
      <option value="-opc">Phylip classic</option>
      <option value="-on">Nexus</option>
    </param>
    </inputs>
    <outputs>
	<data format="txt" name="output" label="${tool.name} on ${on_string}: output file" />
    </outputs>
    <help>
**What it does**

FASTA2PHYLIP-E uses seqConverter.pl (Bininda-Emonds, 2010) to convert an aligned FASTA input file to PHYLIP extended file format.

------

**Inputs**

Aligned FASTA file.

------

**Outputs**

PHYLIP extended file.

------

**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a
publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html

Additional Citations for this tool

Bininda-Emonds, O.R.P. 2010. seqConverter.pl. Program distributed by the author. AG Systematik und
Evolutionsbiologie, IBU - Fakultät V, Carl von Ossietzky Universität Oldenburg.

http://www.molekularesystematik.uni-oldenburg.de/33997.html#Sequences

    </help>
</tool>
author	osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date	Tue, 11 Mar 2014 12:19:13 -0700
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