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annotate phyloconversion/fasta2phylip-e.xml @ 0:5b9a38ec4a39 draft default tip
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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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1 <tool id="fasta2phylip-e" name="FASTA2PHYLIP-E" version="1.0"> |
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2 <description>Convert Aligned FASTA to PHYLIP extended</description> |
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3 <command interpreter="perl"> |
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4 seqConverterG.pl -d$input $format -O$output |
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5 </command> |
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6 <inputs> |
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7 <param name="input" type="data" format="fasta" label="Input Fasta File" help="Aligned fasta" /> |
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8 <param name="format" type="select" label="Output Format"> |
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9 <option value="-ope">Phylip extended</option> |
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10 <option value="-opc">Phylip classic</option> |
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11 <option value="-on">Nexus</option> |
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12 </param> |
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13 </inputs> |
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14 <outputs> |
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15 <data format="txt" name="output" label="${tool.name} on ${on_string}: output file" /> |
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16 </outputs> |
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17 <help> |
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18 **What it does** |
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19 |
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20 FASTA2PHYLIP-E uses seqConverter.pl (Bininda-Emonds, 2010) to convert an aligned FASTA input file to PHYLIP extended file format. |
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21 |
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22 ------ |
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23 |
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24 **Inputs** |
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25 |
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26 Aligned FASTA file. |
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27 |
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28 ------ |
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29 |
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30 **Outputs** |
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31 |
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32 PHYLIP extended file. |
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33 |
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34 ------ |
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35 |
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36 **Citations** |
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37 |
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38 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a |
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39 publication, please consider citing the following. |
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40 |
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41 Current Osiris Citation is here |
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42 |
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43 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html |
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44 |
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45 Additional Citations for this tool |
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46 |
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47 Bininda-Emonds, O.R.P. 2010. seqConverter.pl. Program distributed by the author. AG Systematik und |
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48 Evolutionsbiologie, IBU - Fakultät V, Carl von Ossietzky Universität Oldenburg. |
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49 |
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50 http://www.molekularesystematik.uni-oldenburg.de/33997.html#Sequences |
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51 |
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52 </help> |
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53 </tool> |