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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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<tool id="get_1_gb" name="Get_1_GB" version="1.0"> <description> Grab one sequence from GenBank using accession number query </description> <requirements> <requirement type="package">bioperl</requirement> </requirements> <command interpreter="perl"> get_1_gb.pl $acc $database $outtype $outfile 2>&1 </command> <inputs> <param name="acc" type="text" label="Accession Number" /> <param name="database" type="select" label="Protein or Nucleotide Data"> <option value="nucleotide">Nucleotide</option> <option value="protein">Protein</option> </param> <param name="outtype" type="select" label="File Format"> <option value="fasta">Fasta</option> <option value="genbank">GenBank</option> </param> </inputs> <outputs> <data format="txt" name="outfile" label="Sequence data from ${tool.name} with ${on_string}" /> </outputs> <help> **What it does** Get_1_GB grabs one sequence from GenBank using accession number query. ------ **Inputs** GenBank accession number ------ **Outputs** FASTA or GenBank ------- **Additional Information** Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org ------- **Citations** This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a publication, please consider citing the following. Current Osiris Citation is here http://osiris-phylogenetics.blogspot.com/2012/10/citation.html Additional Citations for this tool Link to Genbank: http://www.ncbi.nlm.nih.gov/genbank/ </help> </tool>