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view orthologs/ucsb_hamster/translate.xml @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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<tool id="translate" name="Translate">
        <description>Runs Translate</description>
        <command interpreter="perl">translate.pl -infile=$inFile 2&gt;log.txt</command>
        <inputs>
                <param name="inFile" type="data" format="fasta" label="fasta file" />

        </inputs>

        <outputs>
                <data  format="fasta" label="Translated" from_work_dir="translate_tc.out" />
        </outputs>

        <help>
                Translate is a part of Hamster.

                Note: Translate will only read the first 20 characters of a header. If there are identical
                headers within your file, the script will crash.

                Input: FASTA file containing ESTs.

        </help>
</tool>