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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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<tool id="gb2phytab" name="GB2PHYTAB" version="1.0"> <description> Convert GenBank format flat file to PHYTAB tabular file </description> <requirements> <requirement type="package">raxml</requirement> </requirements> <command interpreter="perl"> gb2phytab.pl $data_file $outfile 2>&1 </command> <inputs> <param format="txt" name="data_file" type="data" label="Genbank format infile." help="Can download from GenBank with get_gb and get_1_gb"/> </inputs> <outputs> <data format="tabular" name="outfile" label="Phytab file from ${on_string}" /> </outputs> <help> **What it does** This tool converts a file in the GenBank (NCBI) flat file format to the PHYTAB tabular format. ------ **Inputs** GenBank flat file format. Description: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord ------ **Outputs** PHYTAB tabular file format. Description:: http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html ------ **Additional Information** Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org ------ **Citations** This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a publication, please consider citing the following. Current Osiris Citation is here http://osiris-phylogenetics.blogspot.com/2012/10/citation.html </help> </tool>