Mercurial > repos > ucsb-phylogenetics > ucsb_phylogenetics

annotate phylomatic/phylomatic.pl @ 2:4de3f9572615 draft

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author ucsb-phylogenetics
date Thu, 21 Jun 2012 17:46:55 -0400
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ucsb-phylogenetics
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1 #!/usr/bin/perl
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ucsb-phylogenetics
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ucsb-phylogenetics
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3 #wrapper written by Roger Ngo and Todd H Oakley, UCSB
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ucsb-phylogenetics
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4
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ucsb-phylogenetics
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5 my $file1 = $ARGV[0];
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ucsb-phylogenetics
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6 my $file2 = $ARGV[1];
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ucsb-phylogenetics
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7
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ucsb-phylogenetics
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8 my $run = qx/phylomatic -f $file1 -t $file2 > output.txt 2> errors.txt /;
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ucsb-phylogenetics
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9
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ucsb-phylogenetics
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10 print $run;