Mercurial > repos > ucsb-phylogenetics > ucsb_phylogenetics

changeset 7:c83d7e34cc88 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author ucsb-phylogenetics
date Sun, 26 Aug 2012 19:50:30 -0400
parents b3e6613299e4
children 798d8401d420
files ucsb_phylogenetics/galaxy_hamster/hamster.loc.sample
diffstat 1 files changed, 14 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ucsb_phylogenetics/galaxy_hamster/hamster.loc.sample	Sun Aug 26 19:50:30 2012 -0400
@@ -0,0 +1,14 @@
+#This is a the file indicating the location of local core orthologs for use in hamster
+#Hamster requires numerous input files in order to use core orthologs
+#
+#4 columns are needed:
+# 
+#core_ortholog_dir	display_name	core_ortholog_path	ref_genome_blast_path	ref_genome
+arthNreg	Arthropods, Ref:Drosophila	/home/galaxy/data/hamster/core_orthologs/arthNreg	/home/galaxy/data/hamster/blast_dbs/drome_4	drome_4
+arthNreg2	Arthropods Updated 6-12, Ref:Drosophila	/home/galaxy/data/hamster/core_orthologs/arthNreg2	/home/galaxy/data/hamster/blast_dbs/drome_4	drome_4
+modelorganisms	Model Organisms, Ref:Drosophila	/home/galaxy/data/hamster/core_orthologs/modelorganisms	/home/galaxy/data/hamster/blast_dbs/DROME	DROME	
+lophotro	Lophotrochozoa, Ref:Lottia	/home/galaxy/data/hamster/core_orthologs/lophotro	/home/galaxy/data/hamster/blast_dbs/lotgi_2713	lotgi_2713
+lophotroOMA	OMA-Lophotrochozoa, Ref:Lottia	/home/galaxy/data/hamster/core_orthologs/Lophotro_oma	/home/galaxy/data/hamster/blast_dbs/lotgi_oma	lotgi_oma
+
+
+#A number of files must be in the right place with the right names for this to work