Mercurial > repos > ufz > iphop_build_database

comparison data_manager/iphop_datamanager.xml @ 2:d636e6221f8e draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/data_managers/data_manager_iphop commit c78bd5eafa3d9450305cc8b32ba9cf8c64c42ba7
author ufz
date Mon, 18 Nov 2024 15:26:14 +0000
parents 26f850e35fa0
children 39dc692a9554
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1:26f850e35fa0 2:d636e6221f8e
1 <tool id="iphop_build_database" name="iPHoP" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="iphop_build_database" name="iPHoP" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>database builder</description> 2 <description>database builder</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.3.3</token> 4 <token name="@TOOL_VERSION@">1.3.3</token>
5 <token name="@VERSION_SUFFIX@">1</token> 5 <token name="@VERSION_SUFFIX@">2</token>
6 <token name="@PROFILE@">22.01</token> 6 <token name="@PROFILE@">22.01</token>
7 </macros> 7 </macros>
8 <requirements> 8 <requirements>
9 <requirement type="package" version="@TOOL_VERSION@">iphop</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">iphop</requirement>
10 </requirements> 10 </requirements>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 mkdir db && 12 mkdir -p '$out_file.extra_files_path'/db &&
13 iphop download 13 iphop download
14 --db_dir db/ 14 --db_dir '$out_file.extra_files_path'/db
15 --db_version $db_version 15 --db_version $db_version
16 ## --full_verify https://bitbucket.org/srouxjgi/iphop/issues/114/db-download-verification-error 16 ## --full_verify https://bitbucket.org/srouxjgi/iphop/issues/114/db-download-verification-error
17 --no_prompt && 17 --no_prompt &&
18 cp '$dmjson' '$out_file' 18 cp '$dmjson' '$out_file'
19 ]]></command> 19 ]]></command>