|
0
|
1 <tool id="client_7" name="runclustalW2 ">
|
|
|
2 <description> Client for method: runclustalW2 , Web service: http://om.cs.uga.edu/demo/clusatlW2.wadl </description>
|
|
|
3 <command interpreter="python">
|
|
|
4 #client_1.py
|
|
|
5 $output
|
|
|
6 http://www.ebi.ac.uk/Tools/services/restclustalw2/run
|
|
|
7 email
|
|
|
8 #if $source0.source0_source=="user" $source0.user_param0 #else $source0.cached_param0 #end if
|
|
|
9 #if $cond_source.optional_param_source=="yes" type
|
|
|
10 #if $cond_source.source1.source1_source=="user" $cond_source.source1.user_param1 #else $cond_source.source1.cached_param1 #end if
|
|
|
11 title
|
|
|
12 #if $cond_source.source2.source2_source=="user" $cond_source.source2.user_param2 #else $cond_source.source2.cached_param2 #end if
|
|
|
13 output
|
|
|
14 #if $cond_source.source3.source3_source=="user" $cond_source.source3.user_param3 #else $cond_source.source3.cached_param3 #end if
|
|
|
15 alignments
|
|
|
16 #if $cond_source.source4.source4_source=="user" $cond_source.source4.user_param4 #else $cond_source.source4.cached_param4 #end if
|
|
|
17 outorder
|
|
|
18 #if $cond_source.source5.source5_source=="user" $cond_source.source5.user_param5 #else $cond_source.source5.cached_param5 #end if
|
|
|
19 sequence
|
|
|
20 #if $cond_source.source6.source6_source=="user" $cond_source.source6.user_param6 #else $cond_source.source6.cached_param6 #end if
|
|
|
21 ktup
|
|
|
22 #if $cond_source.source7.source7_source=="user" $cond_source.source7.user_param7 #else $cond_source.source7.cached_param7 #end if
|
|
|
23 window
|
|
|
24 #if $cond_source.source8.source8_source=="user" $cond_source.source8.user_param8 #else $cond_source.source8.cached_param8 #end if
|
|
|
25 score
|
|
|
26 #if $cond_source.source9.source9_source=="user" $cond_source.source9.user_param9 #else $cond_source.source9.cached_param9 #end if
|
|
|
27 topdiag
|
|
|
28 #if $cond_source.source10.source10_source=="user" $cond_source.source10.user_param10 #else $cond_source.source10.cached_param10 #end if
|
|
|
29 pairgap
|
|
|
30 #if $cond_source.source11.source11_source=="user" $cond_source.source11.user_param11 #else $cond_source.source11.cached_param11 #end if
|
|
|
31 pwmatrix
|
|
|
32 #if $cond_source.source12.source12_source=="user" $cond_source.source12.user_param12 #else $cond_source.source12.cached_param12 #end if
|
|
|
33 pwdnamatrix
|
|
|
34 #if $cond_source.source13.source13_source=="user" $cond_source.source13.user_param13 #else $cond_source.source13.cached_param13 #end if
|
|
|
35 pwgapopen
|
|
|
36 #if $cond_source.source14.source14_source=="user" $cond_source.source14.user_param14 #else $cond_source.source14.cached_param14 #end if
|
|
|
37 pwgapext
|
|
|
38 #if $cond_source.source15.source15_source=="user" $cond_source.source15.user_param15 #else $cond_source.source15.cached_param15 #end if
|
|
|
39 matrix
|
|
|
40 #if $cond_source.source16.source16_source=="user" $cond_source.source16.user_param16 #else $cond_source.source16.cached_param16 #end if
|
|
|
41 dnamatrix
|
|
|
42 #if $cond_source.source17.source17_source=="user" $cond_source.source17.user_param17 #else $cond_source.source17.cached_param17 #end if
|
|
|
43 gapopen
|
|
|
44 #if $cond_source.source18.source18_source=="user" $cond_source.source18.user_param18 #else $cond_source.source18.cached_param18 #end if
|
|
|
45 noendgaps
|
|
|
46 #if $cond_source.source19.source19_source=="user" $cond_source.source19.user_param19 #else $cond_source.source19.cached_param19 #end if
|
|
|
47 gapext
|
|
|
48 #if $cond_source.source20.source20_source=="user" $cond_source.source20.user_param20 #else $cond_source.source20.cached_param20 #end if
|
|
|
49 gapext
|
|
|
50 #if $cond_source.source21.source21_source=="user" $cond_source.source21.user_param21 #else $cond_source.source21.cached_param21 #end if
|
|
|
51 iteration
|
|
|
52 #if $cond_source.source22.source22_source=="user" $cond_source.source22.user_param22 #else $cond_source.source22.cached_param22 #end if
|
|
|
53 numiter
|
|
|
54 #if $cond_source.source23.source23_source=="user" $cond_source.source23.user_param23 #else $cond_source.source23.cached_param23 #end if
|
|
|
55 #else
|
|
|
56 #end if
|
|
|
57 </command>
|
|
|
58 <inputs>
|
|
|
59 <conditional name="source0">
|
|
|
60 <param name="source0_source" type="select" label="id Source">
|
|
|
61 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
62 <option value="user">User will enter the param value</option>
|
|
|
63 </param>
|
|
|
64 <when value="user">
|
|
|
65 <param format="text" size = "150" name = "user_param0" type="text" label="Enter email" help="see tip below" />
|
|
|
66 </when>
|
|
|
67 <when value="cached">
|
|
|
68 <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter id"/>
|
|
|
69 </when></conditional> <conditional name="cond_source">
|
|
|
70 <param name="optional_param_source" type="select" label="Display Additional Parameters">
|
|
|
71 <option value="no" selected="true">no</option>
|
|
|
72 <option value="yes">yes</option>
|
|
|
73 </param>
|
|
|
74 <when value="no">
|
|
|
75 </when>
|
|
|
76 <when value="yes">
|
|
|
77
|
|
|
78 <conditional name="source1">
|
|
|
79 <param name="source1_source" type="select" label="type Source">
|
|
|
80 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
81 <option value="user">User will enter the param value</option>
|
|
|
82 </param>
|
|
|
83 <when value="user"><param name="user_param1" type="select" label="Select type" help="see tip below">
|
|
|
84 <option value="protein" selected="true">protein</option>
|
|
|
85 <option value="dna" >dna</option>
|
|
|
86 </param>
|
|
|
87 </when>
|
|
|
88 <when value="cached">
|
|
|
89 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter type"/>
|
|
|
90 </when></conditional>
|
|
|
91
|
|
|
92 <conditional name="source2">
|
|
|
93 <param name="source2_source" type="select" label="title Source">
|
|
|
94 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
95 <option value="user">User will enter the param value</option>
|
|
|
96 </param>
|
|
|
97 <when value="user"><param format="text" size = "150" name = "user_param2" type="text" label="Enter title" help="see tip below" />
|
|
|
98 </when>
|
|
|
99 <when value="cached">
|
|
|
100 <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter title"/>
|
|
|
101 </when></conditional>
|
|
|
102
|
|
|
103 <conditional name="source3">
|
|
|
104 <param name="source3_source" type="select" label="output Source">
|
|
|
105 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
106 <option value="user">User will enter the param value</option>
|
|
|
107 </param>
|
|
|
108 <when value="user"><param name="user_param3" type="select" label="Select output" help="see tip below">
|
|
|
109 <option value="aln1" selected="true">aln1</option>
|
|
|
110 <option value="aln2" >aln2</option>
|
|
|
111 <option value="gcg" >gcg</option>
|
|
|
112 <option value="phylip" >phylip</option>
|
|
|
113 <option value="nexus" >nexus</option>
|
|
|
114 <option value="pir" >pir</option>
|
|
|
115 <option value="gde" >gde</option>
|
|
|
116 <option value="fasta" >fasta</option>
|
|
|
117 </param>
|
|
|
118 </when>
|
|
|
119 <when value="cached">
|
|
|
120 <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter output"/>
|
|
|
121 </when></conditional>
|
|
|
122
|
|
|
123 <conditional name="source4">
|
|
|
124 <param name="source4_source" type="select" label="alignments Source">
|
|
|
125 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
126 <option value="user">User will enter the param value</option>
|
|
|
127 </param>
|
|
|
128 <when value="user"><param name="user_param4" type="select" label="Select alignments" help="see tip below">
|
|
|
129 <option value="slow" selected="true">slow</option>
|
|
|
130 <option value="fast" >fast</option>
|
|
|
131 </param>
|
|
|
132 </when>
|
|
|
133 <when value="cached">
|
|
|
134 <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter alignments"/>
|
|
|
135 </when></conditional>
|
|
|
136
|
|
|
137 <conditional name="source5">
|
|
|
138 <param name="source5_source" type="select" label="outorder Source">
|
|
|
139 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
140 <option value="user">User will enter the param value</option>
|
|
|
141 </param>
|
|
|
142 <when value="user"><param name="user_param5" type="select" label="Select outorder" help="see tip below">
|
|
|
143 <option value="aligned" selected="true">aligned</option>
|
|
|
144 <option value="input" >input</option>
|
|
|
145 </param>
|
|
|
146 </when>
|
|
|
147 <when value="cached">
|
|
|
148 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter outorder"/>
|
|
|
149 </when></conditional>
|
|
|
150
|
|
|
151 <conditional name="source6">
|
|
|
152 <param name="source6_source" type="select" label="sequence Source">
|
|
|
153 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
154 <option value="user">User will enter the param value</option>
|
|
|
155 </param>
|
|
|
156 <when value="user"><param format="text" size = "150" name = "user_param6" type="text" label="Enter sequence" help="see tip below" />
|
|
|
157 </when>
|
|
|
158 <when value="cached">
|
|
|
159 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter sequence"/>
|
|
|
160 </when></conditional>
|
|
|
161
|
|
|
162 <conditional name="source7">
|
|
|
163 <param name="source7_source" type="select" label="ktup Source">
|
|
|
164 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
165 <option value="user">User will enter the param value</option>
|
|
|
166 </param>
|
|
|
167 <when value="user"><param name="user_param7" type="select" label="Select ktup" help="see tip below">
|
|
|
168 <option value="1" selected="true">1</option>
|
|
|
169 <option value="2" >2</option>
|
|
|
170 <option value="3" >3</option>
|
|
|
171 <option value="4" >4</option>
|
|
|
172 <option value="5" >5</option>
|
|
|
173 </param>
|
|
|
174 </when>
|
|
|
175 <when value="cached">
|
|
|
176 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter ktup"/>
|
|
|
177 </when></conditional>
|
|
|
178
|
|
|
179 <conditional name="source8">
|
|
|
180 <param name="source8_source" type="select" label="window Source">
|
|
|
181 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
182 <option value="user">User will enter the param value</option>
|
|
|
183 </param>
|
|
|
184 <when value="user"><param name="user_param8" type="select" label="Select window" help="see tip below">
|
|
|
185 <option value="10" >10</option>
|
|
|
186 <option value="9" >9</option>
|
|
|
187 <option value="8" >8</option>
|
|
|
188 <option value="7" >7</option>
|
|
|
189 <option value="6" >6</option>
|
|
|
190 <option value="5" selected="true">5</option>
|
|
|
191 <option value="4" >4</option>
|
|
|
192 <option value="3" >3</option>
|
|
|
193 <option value="2" >2</option>
|
|
|
194 <option value="1" >1</option>
|
|
|
195 <option value="0" >0</option>
|
|
|
196 </param>
|
|
|
197 </when>
|
|
|
198 <when value="cached">
|
|
|
199 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter window"/>
|
|
|
200 </when></conditional>
|
|
|
201
|
|
|
202 <conditional name="source9">
|
|
|
203 <param name="source9_source" type="select" label="score Source">
|
|
|
204 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
205 <option value="user">User will enter the param value</option>
|
|
|
206 </param>
|
|
|
207 <when value="user"><param name="user_param9" type="select" label="Select score" help="see tip below">
|
|
|
208 <option value="percent" selected="true">percent</option>
|
|
|
209 <option value="absolute" >absolute</option>
|
|
|
210 </param>
|
|
|
211 </when>
|
|
|
212 <when value="cached">
|
|
|
213 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter score"/>
|
|
|
214 </when></conditional>
|
|
|
215
|
|
|
216 <conditional name="source10">
|
|
|
217 <param name="source10_source" type="select" label="topdiag Source">
|
|
|
218 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
219 <option value="user">User will enter the param value</option>
|
|
|
220 </param>
|
|
|
221 <when value="user"><param name="user_param10" type="select" label="Select topdiag" help="see tip below">
|
|
|
222 <option value="10" >10</option>
|
|
|
223 <option value="9" >9</option>
|
|
|
224 <option value="8" >8</option>
|
|
|
225 <option value="7" >7</option>
|
|
|
226 <option value="6" >6</option>
|
|
|
227 <option value="5" selected="true">5</option>
|
|
|
228 <option value="4" >4</option>
|
|
|
229 <option value="3" >3</option>
|
|
|
230 <option value="2" >2</option>
|
|
|
231 <option value="1" >1</option>
|
|
|
232 </param>
|
|
|
233 </when>
|
|
|
234 <when value="cached">
|
|
|
235 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter topdiag"/>
|
|
|
236 </when></conditional>
|
|
|
237
|
|
|
238 <conditional name="source11">
|
|
|
239 <param name="source11_source" type="select" label="pairgap Source">
|
|
|
240 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
241 <option value="user">User will enter the param value</option>
|
|
|
242 </param>
|
|
|
243 <when value="user"><param name="user_param11" type="select" label="Select pairgap" help="see tip below">
|
|
|
244 <option value="1" >1</option>
|
|
|
245 <option value="2" >2</option>
|
|
|
246 <option value="3" selected="true">3</option>
|
|
|
247 <option value="4" >4</option>
|
|
|
248 <option value="5" >5</option>
|
|
|
249 <option value="10" >10</option>
|
|
|
250 <option value="25" >25</option>
|
|
|
251 <option value="50" >50</option>
|
|
|
252 <option value="100" >100</option>
|
|
|
253 <option value="250" >250</option>
|
|
|
254 <option value="500" >500</option>
|
|
|
255 </param>
|
|
|
256 </when>
|
|
|
257 <when value="cached">
|
|
|
258 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter pairgap"/>
|
|
|
259 </when></conditional>
|
|
|
260
|
|
|
261 <conditional name="source12">
|
|
|
262 <param name="source12_source" type="select" label="pwmatrix Source">
|
|
|
263 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
264 <option value="user">User will enter the param value</option>
|
|
|
265 </param>
|
|
|
266 <when value="user"><param name="user_param12" type="select" label="Select pwmatrix" help="see tip below">
|
|
|
267 <option value="blosum" >blosum</option>
|
|
|
268 <option value="pam" >pam</option>
|
|
|
269 <option value="gonnet" selected="true">gonnet</option>
|
|
|
270 <option value="id" >id</option>
|
|
|
271 </param>
|
|
|
272 </when>
|
|
|
273 <when value="cached">
|
|
|
274 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter pwmatrix"/>
|
|
|
275 </when></conditional>
|
|
|
276
|
|
|
277 <conditional name="source13">
|
|
|
278 <param name="source13_source" type="select" label="pwdnamatrix Source">
|
|
|
279 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
280 <option value="user">User will enter the param value</option>
|
|
|
281 </param>
|
|
|
282 <when value="user"><param name="user_param13" type="select" label="Select pwdnamatrix" help="see tip below">
|
|
|
283 <option value="iub" selected="true">iub</option>
|
|
|
284 <option value="clustalw" >clustalw</option>
|
|
|
285 </param>
|
|
|
286 </when>
|
|
|
287 <when value="cached">
|
|
|
288 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter pwdnamatrix"/>
|
|
|
289 </when></conditional>
|
|
|
290
|
|
|
291 <conditional name="source14">
|
|
|
292 <param name="source14_source" type="select" label="pwgapopen Source">
|
|
|
293 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
294 <option value="user">User will enter the param value</option>
|
|
|
295 </param>
|
|
|
296 <when value="user"><param name="user_param14" type="select" label="Select pwgapopen" help="see tip below">
|
|
|
297 <option value="100" >100</option>
|
|
|
298 <option value="50" >50</option>
|
|
|
299 <option value="25" >25</option>
|
|
|
300 <option value="10" selected="true">10</option>
|
|
|
301 <option value="5" >5</option>
|
|
|
302 <option value="2" >2</option>
|
|
|
303 <option value="1" >1</option>
|
|
|
304 </param>
|
|
|
305 </when>
|
|
|
306 <when value="cached">
|
|
|
307 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter pwgapopen"/>
|
|
|
308 </when></conditional>
|
|
|
309
|
|
|
310 <conditional name="source15">
|
|
|
311 <param name="source15_source" type="select" label="pwgapext Source">
|
|
|
312 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
313 <option value="user">User will enter the param value</option>
|
|
|
314 </param>
|
|
|
315 <when value="user"><param name="user_param15" type="select" label="Select pwgapext" help="see tip below">
|
|
|
316 <option value="0.05" >0.05</option>
|
|
|
317 <option value="0.1" selected="true">0.1</option>
|
|
|
318 <option value="0.5" >0.5</option>
|
|
|
319 <option value="1.0" >1.0</option>
|
|
|
320 <option value="2.5" >2.5</option>
|
|
|
321 <option value="5.0" >5.0</option>
|
|
|
322 <option value="7.5" >7.5</option>
|
|
|
323 <option value="10.0" >10.0</option>
|
|
|
324 </param>
|
|
|
325 </when>
|
|
|
326 <when value="cached">
|
|
|
327 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter pwgapext"/>
|
|
|
328 </when></conditional>
|
|
|
329
|
|
|
330 <conditional name="source16">
|
|
|
331 <param name="source16_source" type="select" label="matrix Source">
|
|
|
332 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
333 <option value="user">User will enter the param value</option>
|
|
|
334 </param>
|
|
|
335 <when value="user"><param name="user_param16" type="select" label="Select matrix" help="see tip below">
|
|
|
336 <option value="blosum" >blosum</option>
|
|
|
337 <option value="pam" >pam</option>
|
|
|
338 <option value="gonnet" selected="true">gonnet</option>
|
|
|
339 <option value="id" >id</option>
|
|
|
340 </param>
|
|
|
341 </when>
|
|
|
342 <when value="cached">
|
|
|
343 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter matrix"/>
|
|
|
344 </when></conditional>
|
|
|
345
|
|
|
346 <conditional name="source17">
|
|
|
347 <param name="source17_source" type="select" label="dnamatrix Source">
|
|
|
348 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
349 <option value="user">User will enter the param value</option>
|
|
|
350 </param>
|
|
|
351 <when value="user"><param name="user_param17" type="select" label="Select dnamatrix" help="see tip below">
|
|
|
352 <option value="iub" selected="true">iub</option>
|
|
|
353 <option value="clustalw" >clustalw</option>
|
|
|
354 </param>
|
|
|
355 </when>
|
|
|
356 <when value="cached">
|
|
|
357 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter dnamatrix"/>
|
|
|
358 </when></conditional>
|
|
|
359
|
|
|
360 <conditional name="source18">
|
|
|
361 <param name="source18_source" type="select" label="gapopen Source">
|
|
|
362 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
363 <option value="user">User will enter the param value</option>
|
|
|
364 </param>
|
|
|
365 <when value="user"><param name="user_param18" type="select" label="Select gapopen" help="see tip below">
|
|
|
366 <option value="100" >100</option>
|
|
|
367 <option value="50" >50</option>
|
|
|
368 <option value="25" >25</option>
|
|
|
369 <option value="10" selected="true">10</option>
|
|
|
370 <option value="5" >5</option>
|
|
|
371 <option value="2" >2</option>
|
|
|
372 <option value="1" >1</option>
|
|
|
373 </param>
|
|
|
374 </when>
|
|
|
375 <when value="cached">
|
|
|
376 <param name = "cached_param18" type="data" label="Choose the step from which to get the parameter gapopen"/>
|
|
|
377 </when></conditional>
|
|
|
378
|
|
|
379 <conditional name="source19">
|
|
|
380 <param name="source19_source" type="select" label="noendgaps Source">
|
|
|
381 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
382 <option value="user">User will enter the param value</option>
|
|
|
383 </param>
|
|
|
384 <when value="user"><param name="user_param19" type="select" label="Select noendgaps" help="see tip below">
|
|
|
385 <option value="false" selected="true">false</option>
|
|
|
386 <option value="true" >true</option>
|
|
|
387 </param>
|
|
|
388 </when>
|
|
|
389 <when value="cached">
|
|
|
390 <param name = "cached_param19" type="data" label="Choose the step from which to get the parameter noendgaps"/>
|
|
|
391 </when></conditional>
|
|
|
392
|
|
|
393 <conditional name="source20">
|
|
|
394 <param name="source20_source" type="select" label="gapext Source">
|
|
|
395 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
396 <option value="user">User will enter the param value</option>
|
|
|
397 </param>
|
|
|
398 <when value="user"><param name="user_param20" type="select" label="Select gapext" help="see tip below">
|
|
|
399 <option value="0.05" >0.05</option>
|
|
|
400 <option value="0.20" selected="true">0.20</option>
|
|
|
401 <option value="0.5" >0.5</option>
|
|
|
402 <option value="1.0" >1.0</option>
|
|
|
403 <option value="2.5" >2.5</option>
|
|
|
404 <option value="5.0" >5.0</option>
|
|
|
405 <option value="7.5" >7.5</option>
|
|
|
406 <option value="10.0" >10.0</option>
|
|
|
407 </param>
|
|
|
408 </when>
|
|
|
409 <when value="cached">
|
|
|
410 <param name = "cached_param20" type="data" label="Choose the step from which to get the parameter gapext"/>
|
|
|
411 </when></conditional>
|
|
|
412
|
|
|
413 <conditional name="source21">
|
|
|
414 <param name="source21_source" type="select" label="gapext Source">
|
|
|
415 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
416 <option value="user">User will enter the param value</option>
|
|
|
417 </param>
|
|
|
418 <when value="user"><param name="user_param21" type="select" label="Select gapext" help="see tip below">
|
|
|
419 <option value="10" >10</option>
|
|
|
420 <option value="9" >9</option>
|
|
|
421 <option value="8" >8</option>
|
|
|
422 <option value="7" >7</option>
|
|
|
423 <option value="6" >6</option>
|
|
|
424 <option value="5" selected="true">5</option>
|
|
|
425 <option value="4" >4</option>
|
|
|
426 <option value="3" >3</option>
|
|
|
427 <option value="2" >2</option>
|
|
|
428 <option value="1" >1</option>
|
|
|
429 </param>
|
|
|
430 </when>
|
|
|
431 <when value="cached">
|
|
|
432 <param name = "cached_param21" type="data" label="Choose the step from which to get the parameter gapext"/>
|
|
|
433 </when></conditional>
|
|
|
434
|
|
|
435 <conditional name="source22">
|
|
|
436 <param name="source22_source" type="select" label="iteration Source">
|
|
|
437 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
438 <option value="user">User will enter the param value</option>
|
|
|
439 </param>
|
|
|
440 <when value="user"><param name="user_param22" type="select" label="Select iteration" help="see tip below">
|
|
|
441 <option value="none" >none</option>
|
|
|
442 <option value="tree" >tree</option>
|
|
|
443 <option value="alignment" >alignment</option>
|
|
|
444 </param>
|
|
|
445 </when>
|
|
|
446 <when value="cached">
|
|
|
447 <param name = "cached_param22" type="data" label="Choose the step from which to get the parameter iteration"/>
|
|
|
448 </when></conditional>
|
|
|
449
|
|
|
450 <conditional name="source23">
|
|
|
451 <param name="source23_source" type="select" label="numiter Source">
|
|
|
452 <option value="cached" selected="true">Param value will be taken from previous step</option>
|
|
|
453 <option value="user">User will enter the param value</option>
|
|
|
454 </param>
|
|
|
455 <when value="user"><param name="user_param23" type="select" label="Select numiter" help="see tip below">
|
|
|
456 <option value="1" selected="true">1</option>
|
|
|
457 <option value="2" >2</option>
|
|
|
458 <option value="3" >3</option>
|
|
|
459 <option value="4" >4</option>
|
|
|
460 <option value="5" >5</option>
|
|
|
461 <option value="6" >6</option>
|
|
|
462 <option value="7" >7</option>
|
|
|
463 <option value="8" >8</option>
|
|
|
464 <option value="9" >9</option>
|
|
|
465 <option value="10" >10</option>
|
|
|
466 </param>
|
|
|
467 </when>
|
|
|
468 <when value="cached">
|
|
|
469 <param name = "cached_param23" type="data" label="Choose the step from which to get the parameter numiter"/>
|
|
|
470 </when></conditional>
|
|
|
471 </when>
|
|
|
472 </conditional>
|
|
|
473 </inputs>
|
|
|
474 <outputs>
|
|
|
475 <data format="tabular" name="output" />
|
|
|
476 </outputs>
|
|
|
477 <help>
|
|
|
478
|
|
|
479 .. class:: infomark
|
|
|
480
|
|
|
481 **TIP:** email type is xsd:string
|
|
|
482 </help>
|
|
|
483 </tool>
|
