Mercurial > repos > uga-galaxy-group > webservice_toolsuite_v1_1
view WebServiceExtensionsV1.1/WebServiceToolWorkflow_REST_SOAP/edit_tool_conf.py~ @ 0:049760c677de default tip
Galaxy WSExtensions added successfully
author | uga-galaxy-group |
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date | Tue, 05 Jul 2011 19:34:18 -0400 |
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''' @author Chaitanya Guttula, Sumedha Ganjoo @see LICENSE (MIT style license file). ''' import os ''' Open the toolconf.xml file and adds the tool under 'Web Service Workflow Tools' that has been passed to it. ''' __author__="Chaitanya Guttula, Sumedha Ganjoo" class editToolConfig(object): def addTool(self,toolName): galaxyhome=os.environ.get('GALAXY_HOME') f1=open(galaxyhome+'/tool_conf.xml','r') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','w') f2.seek(0,0) ##first copy everything upto WebServiceTool1.xml into another file f2 line = f1.readline() f2.write(line) lineStripped=line.lstrip() lineStripped=lineStripped.rstrip() #add the workflow Web service invocation tool under Web Service Workflow Tools section while not lineStripped == '<section name="Web Service Workflow Tools" id="WebServiceWorkflow">': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ## add new tool to f2 f2.write(' <tool file="WebServiceToolWorkflow_REST_SOAP/workflowclients/'+toolName + '.xml"/>\n') ## copy rest of f1 into f2 while not lineStripped == '</toolbox>': line = f1.readline() f2.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line ##close f1 and f2 f1.close() f2.close() ##interchange modes of f1 and f2 f1=open(galaxyhome+'/tool_conf.xml','w') f1.seek(0,0) f2=open(galaxyhome+'/tool_conf_backup.xml','r') f2.seek(0,0) line = f2.readline() f1.write(line) lineStripped=line.lstrip() ##write entire f2 into f1 (reverse roles) while not lineStripped == '</toolbox>': line = f2.readline() f1.write(line) lineStripped = line.lstrip() lineStripped=lineStripped.rstrip() else: print line f1.close() f2.close()