comparison tool_dependencies.xml @ 2:1d94386c45bc draft

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author ulfschaefer
date Fri, 18 Dec 2015 07:26:23 -0500
parents 2c04309b9040
children 618a0c8a468b
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1:2c04309b9040 2:1d94386c45bc
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="python" version="2.7.10"> 3 <package name="python" version="2.7.10">
4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bintrees" version="2.0.2"> 6 <package name="bintrees" version="2.0.2">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">https://pypi.python.org/packages/source/b/bintrees/bintrees-2.0.2.tar.gz</action> 9 <action type="download_by_url">https://pypi.python.org/packages/source/b/bintrees/bintrees-2.0.2.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="python" version="2.7.10" />
13 </repository>
14 </action>
10 <action type="make_directory">$INSTALL_DIR/lib/python</action> 15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
11 <action type="shell_command"> 16 <action type="shell_command">
12 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 17 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
13 python setup.py install --install-lib $INSTALL_DIR/lib/python 18 python setup.py install --install-lib $INSTALL_DIR/lib/python
14 </action> 19 </action>
15 <action type="set_environment"> 20 <action type="set_environment">
16 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 21 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
17 <environment_variable action="set_to" name="PYTHONPATH_BINTREES">$INSTALL_DIR/lib/python</environment_variable> 22 <environment_variable action="set_to" name="PYTHONPATH_BINTREES">$INSTALL_DIR/lib/python</environment_variable>
18 </action> 23 </action>
19 </actions> 24 </actions>
20 </install> 25 </install>
21 <readme> 26 <readme>
22 This Galaxy Tool shed package installs bintrees version 2.0.2 27 This Galaxy Tool shed package installs bintrees version 2.0.2
23 (https://pypi.python.org/pypi/PyVCF) package for use with python 2.7.10. 28 (https://pypi.python.org/pypi/PyVCF) package for use with python 2.7.10.
24 </readme> 29 </readme>
25 </package> 30 </package>
26 </tool_dependency> 31 </tool_dependency>