Mercurial > repos > venice-juanillas > convert_format

diff file_conversion/alchemy2matrix.xml @ 0:f3222062f9ca draft

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author venice-juanillas
date Mon, 05 Nov 2012 23:01:18 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/file_conversion/alchemy2matrix.xml	Mon Nov 05 23:01:18 2012 -0500
@@ -0,0 +1,22 @@
+<tool id="alchemy2matrix" name="Alchemy to Matrix">
+  <description>file converter</description>
+  <command interpreter="perl">alchemy2matrix.pl $input $output</command>
+  <inputs>
+    <param format="tabular" name="input" type="data" label="Source file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input" value="raw_data.txt"/>
+      <output name="out_file1" file="output.txt"/>
+    </test>
+  </tests>
+
+  <help>
+This tool converts an alchemy-output file format to a SNP matrix format.
+  </help>
+
+</tool>
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