Mercurial > repos > vimalkumarvelayudhan > riboplot

annotate run_riboplot_sample.sh @ 11:7571f5c89090

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Simple error message now output to HTML. Detailed error goes to standard error. Other changes: * Remove information on time taken (riboplot). * Remove striped table styles (not used. unusable on sorting). * log before re-raising errors.
author Vimalkumar Velayudhan <vimal@biotechcoder.com>
date Wed, 19 Aug 2015 10:14:52 +0100
parents 8e1efafa6277
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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1 #!/bin/bash
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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2 python riboplot/riboplot.py -b tests/data/5hRPFsorted.bam \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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3 -f tests/data/zebrafish.fna \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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4 -t 'gi|148357119|ref|NM_001098396.1|' \
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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5 # -n tests/data/5hmRNAsorted.bam
8e1efafa6277 Updated version
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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6