--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq-hts_1.0/bin/start_interpreter.sh	Wed May 09 20:43:47 2012 -0400
@@ -0,0 +1,24 @@
+#/bin/bash
+# Copyright (C) 2010-2012 Max Planck Society
+
+set -e
+
+. `dirname $0`/deseq_config.sh
+
+export MATLAB_RETURN_FILE=`tempfile`
+
+if [ "$INTERPRETER" == 'octave' ];
+then
+	echo exit | ${OCTAVE_BIN_PATH} --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
+fi
+
+if [ "$INTERPRETER" == 'matlab' ];
+then
+	echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
+fi
+
+test -f $MATLAB_RETURN_FILE || exit 0
+ret=`cat $MATLAB_RETURN_FILE` ;
+rm -f $MATLAB_RETURN_FILE
+exit $ret
+