Mercurial > repos > vipints > deseq_hts

diff deseq-hts_1.0/bin/deseq_config.sh.sample @ 9:e27b4f7811c2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated DESeq version 1.12
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:09:28 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/deseq-hts_1.0/bin/deseq_config.sh.sample	Tue Oct 08 08:09:28 2013 -0400
@@ -0,0 +1,17 @@
+#!/bin/bash
+export DESEQ_VERSION=1.10.1
+export DESEQ_PATH=/home/galaxy/software/deseq_hts/
+export DESEQ_SRC_PATH=$DESEQ_PATH/src
+export DESEQ_BIN_PATH=$DESEQ_PATH/bin
+export INTERPRETER=octave
+export MATLAB_BIN_PATH=
+export MATLAB_MEX_PATH=
+export MATLAB_INCLUDE_DIR=
+export OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave
+export OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile
+export SAMTOOLS_DIR=/home/galaxy/software/samtools-0.1.17/
+export PYTHON_PATH=/usr/bin/python
+export SCIPY_PATH=/home/galaxy/software/lib/python2.6/site-packages/
+export R_PATH=/home/galaxy/software/bin/R
+export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/oqtansTools/oqtans_dep/octave-3.6.2_64/lib/octave/3.6.2/
+export ENVIRONMENT=galaxy