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view deseq-hts_1.0/bin/deseq_config.sh.sample @ 9:e27b4f7811c2 draft

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Updated DESeq version 1.12
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 08:09:28 -0400
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#!/bin/bash
export DESEQ_VERSION=1.10.1
export DESEQ_PATH=/home/galaxy/software/deseq_hts/
export DESEQ_SRC_PATH=$DESEQ_PATH/src
export DESEQ_BIN_PATH=$DESEQ_PATH/bin
export INTERPRETER=octave
export MATLAB_BIN_PATH=
export MATLAB_MEX_PATH=
export MATLAB_INCLUDE_DIR=
export OCTAVE_BIN_PATH=/home/galaxy/software/octave/source/octave-3.6.3/octave
export OCTAVE_MKOCT=/home/galaxy/software/bin/mkoctfile
export SAMTOOLS_DIR=/home/galaxy/software/samtools-0.1.17/
export PYTHON_PATH=/usr/bin/python
export SCIPY_PATH=/home/galaxy/software/lib/python2.6/site-packages/
export R_PATH=/home/galaxy/software/bin/R
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/oqtansTools/oqtans_dep/octave-3.6.2_64/lib/octave/3.6.2/
export ENVIRONMENT=galaxy