Mercurial > repos > vipints > fml_gff3togtf
annotate test-data/MB7_3R.bed @ 9:7d67331368f3
fixing the new version upload manually
author | vipints <vipin@cbio.mskcc.org> |
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date | Thu, 23 Apr 2015 17:57:49 -0400 |
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2 3R 226211 227739 CG14647.a 1 + 226211 227739 0 3 649,132,417, 0,864,1111, |
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3 3R 226211 227739 CG14647-RB 1 + 226211 227739 0 3 649,132,417, 0,864,1111, |
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58 3R 463731 467317 CG9775.a 2 - 463731 467317 0 5 830,540,119,324,267, 0,1008,1624,2003,3319, |
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80 3R 471652 474613 CG1058-RA 1 + 471652 474613 0 4 400,103,575,1497, 0,645,815,1464, |
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81 3R 330332 331985.0 CG34425-RA 34 - 330332 331985.0 0 1 1653, 0, |
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82 3R 228770 232914 CG14648-RA 1 + 228770 232914 0 6 232,171,719,69,211,1326, 0,1420,1652,2431,2552,2818, |
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83 3R 319125 383789 CG34357.a 3 - 319125 383789 0 15 1144,12,178,265,193,177,992,91,793,111,100,377,885,311,126, 0,1205,1531,1770,2286,2552,3072,4154,9035,10211,29584,40745,44401,63292,64538, |
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84 3R 319125 360075 CG34357.b 3 - 319125 360075 0 12 1144,12,178,265,193,177,992,91,793,111,100,205, 0,1205,1531,1770,2286,2552,3072,4154,9035,10211,29584,40745, |
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85 3R 340351 383789 CG34357-RB 1 - 340351 383789 0 6 490,100,377,885,311,126, 0,8358,19519,23175,42066,43312, |
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86 3R 603218 606053 CG14655-RA 1 - 603218 606053 0 3 843,610,713, 0,1013,2122, |
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87 3R 1047358 1049197 CG2604-RC 2 - 1047358 1049197 0 2 1510,226, 0,1613, |
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88 3R 1047346 1049197 CG2604-RA 1 - 1047346 1049197 0 2 1564,226, 0,1625, |
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90 3R 60867 66780 CG1106-RH 1 + 60867 66780 0 9 179,61,252,193,75,196,1706,126,181, 0,942,1407,2479,3157,3424,3673,5443,5732, |
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91 3R 60941 66780 CG1106.a 2 + 60941 66780 0 8 105,387,193,75,196,1706,126,181, 0,1333,2405,3083,3350,3599,5369,5658, |
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92 3R 60867 66781 CG1106.b 3 + 60867 66781 0 8 179,61,252,193,75,196,1896,182, 0,942,1407,2479,3157,3424,3673,5732, |
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95 3R 62514 66780 CG1106-RA 1 + 62514 66780 0 7 147,193,75,196,1706,126,181, 0,832,1510,1777,2026,3796,4085, |
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99 3R 64258 66780 CG1106.f 3 + 64258 66780 0 4 229,1706,126,181, 0,282,2052,2341, |
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100 3R 64258 66781 CG1106.g 3 + 64258 66781 0 3 229,1896,182, 0,282,2341, |
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101 3R 255523 260263 CG9805.a 2 - 255523 260263 0 5 367,2239,1085,322,22, 0,426,2715,3897,4718, |
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103 3R 77613 78765 CG14644.a 2 - 77613 78765 0 3 351,417,229, 0,406,923, |
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104 3R 77613 78765 CG14644-RA 1 - 77613 78765 0 3 351,517,168, 0,406,984, |
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105 3R 1079069 1081125 CG1113-RA 3 + 1079069 1081125 0 3 322,1045,430, 0,527,1626, |
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106 3R 15413 15982.0 CG18090.a 31 - 15413 15982.0 0 1 569, 0, |
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107 3R 15387 16170.0 CG18090-RA 34 - 15387 16170.0 0 1 783, 0, |
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108 3R 135363 136669 CG9779-RA 1 - 135363 136669 0 3 717,241,161, 0,772,1145, |
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109 3R 216096 217839 CG14646-RA 1 + 216096 217839 0 2 684,1007, 0,736, |
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110 3R 68506 68868 CG34305-RA 1 - 68506 68868 0 2 275,25, 0,337, |
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111 3R 233158 241835 CG32944-RE 2 - 233158 241835 0 8 567,182,126,127,71,166,56,431, 0,622,5444,5804,5999,7096,7323,8246, |
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112 3R 58764 60763.0 CG14637-RA 31 + 58764 60763.0 0 1 1999, 0, |
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113 3R 66854 68508 CG14642-RB 3 - 66854 68508 0 5 566,165,110,116,449, 0,622,845,1025,1205, |
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114 3R 66766 68508 CG14642-RA 1 - 66766 68508 0 5 88,667,110,99,449, 0,208,933,1130,1293, |
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115 3R 812221 836754 CG2022-RB 1 - 812221 836754 0 4 387,208,228,80, 0,1751,2038,24453, |
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116 3R 1051881 1053248 CG1115-RA 1 + 1051881 1053248 0 2 819,203, 0,1164, |
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117 3R 360 10200 CG12581-RB 3 + 360 10200 0 4 149,1336,866,762, 0,217,7423,9078, |
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118 3R 379 10200 CG12581-RA 1 + 379 10200 0 3 1534,866,762, 0,7404,9059, |
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119 3R 17135 21871 DMG5-MB6.chr3R.1.002.a.a 2 + 17135 21871 0 6 116,95,486,540,168,281, 0,2817,2978,3535,4231,4455, |
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120 3R 137257 140094 CG9791.a 3 + 137257 140094 0 7 439,285,151,310,135,630,531, 0,494,847,1061,1425,1622,2306, |
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121 3R 137248 140094 CG9791.b 3 + 137248 140094 0 7 67,319,504,310,135,630,531, 0,129,503,1070,1434,1631,2315, |
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122 3R 137257 140094 CG9791-RC 1 + 137257 140094 0 6 439,504,310,135,630,531, 0,494,1061,1425,1622,2306, |
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123 3R 1090665 1094320 CG31543-RB.3d 1 + 1090665 1094320 0 5 259,280,81,140,1137, 0,1809,2177,2319,2518, |
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124 3R 1090663 1094197 CG31543-RA 1 + 1090663 1094197 0 5 696,280,81,140,1014, 0,1811,2179,2321,2520, |
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125 3R 1082762 1094197 CG31543-RC 1 + 1082762 1094197 0 5 1081,280,81,140,1014, 0,9712,10080,10222,10421, |
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126 3R 642055 643498 CG1126-RA 1 + 642055 643498 0 5 95,149,196,238,534, 0,153,362,618,909, |
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127 3R 642054 643489 CG1126.a 1 + 642054 643489 0 4 96,405,238,525, 0,154,619,910, |
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128 3R 732339 735803 CG1119-RB 1 + 732339 735803 0 4 105,1331,909,933, 0,171,1564,2531, |
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129 3R 732339 735803 CG1119-RA 1 + 732339 735803 0 4 105,1331,843,933, 0,171,1630,2531, |
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130 3R 999323 1043147 CG42312-RE 1 - 999323 1043147 0 20 394,122,2026,217,249,119,248,525,466,207,245,55,122,353,82,519,194,109,211,493, 0,454,663,3692,4035,7455,7634,7946,8818,10175,10677,10985,11767,13706,28043,28466,29058,29448,29622,43331, |
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131 3R 998391 1043147 CG42312-RC 1 - 998391 1043147 0 17 1326,122,2026,217,249,119,248,525,466,122,353,82,519,194,109,211,493, 0,1386,1595,4624,4967,8387,8566,8878,9750,12699,14638,28975,29398,29990,30380,30554,44263, |
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132 3R 601322 603213 CG2503-RA 1 + 601322 603213 0 3 179,967,628, 0,237,1263, |
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133 3R 791167 794226 CG1124-RA 1 + 791167 794226 0 4 202,110,415,407, 0,1683,2175,2652, |
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134 3R 1081175 1082423 CG12173-RA 1 - 1081175 1082423 0 3 166,257,454, 0,228,794, |
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135 3R 1081165 1082423 CG12173-RB 1 - 1081165 1082423 0 3 176,257,454, 0,238,804, |
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136 3R 145413 151818 CG9795.a 2 + 145413 151818 0 11 199,203,148,392,203,212,174,85,82,617,400, 0,2153,2656,3539,3995,4261,4645,4896,5038,5181,6005, |
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137 3R 145411 151817 CG9795-RA 1 + 145411 151817 0 11 201,203,148,392,203,212,174,85,82,589,399, 0,2155,2658,3541,3997,4263,4647,4898,5040,5183,6007, |
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138 3R 145411 152096 CG9795-RD 1 + 145411 152096 0 10 167,203,392,203,212,174,85,82,617,678, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, |
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139 3R 145411 151818 CG9795.b 2 + 145411 151818 0 10 201,203,392,203,212,174,85,82,617,400, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, |
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140 3R 145411 151817 CG9795-RC 3 + 145411 151817 0 10 201,203,392,203,212,174,85,82,589,399, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, |
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141 3R 145411 151817 CG9795-RB 3 + 145411 151817 0 10 167,203,392,203,212,174,85,82,589,399, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, |
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142 3R 634057 637788 CG2525-RA 1 - 634057 637788 0 2 939,84, 0,3647, |
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143 3R 560135 574777 CG9765-RA 1 - 560135 574777 0 10 933,150,162,105,72,62,308,2331,202,265, 0,994,1228,2609,2767,2900,3059,7438,10050,14377, |
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144 3R 560131 572136 CG9765-RD 3 - 560131 572136 0 10 937,150,162,105,72,65,266,2331,202,573, 0,998,1232,2613,2771,2904,3063,7442,10054,11432, |
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145 3R 560131 572136 CG9765-RC 1 - 560131 572136 0 10 937,150,162,105,72,65,266,2331,202,618, 0,998,1232,2613,2771,2904,3063,7442,10054,11387, |
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146 3R 560131 564709 CG9765.a 2 - 560131 564709 0 9 937,150,162,105,72,65,308,117,104, 0,998,1232,2613,2771,2904,3063,3655,4474, |
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147 3R 560131 565269 CG9765.b 2 - 560131 565269 0 8 937,150,162,105,72,65,290,37, 0,998,1232,2613,2771,2904,3063,5101, |
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148 3R 560131 565354 CG9765.c 2 - 560131 565354 0 8 937,150,162,105,72,65,266,61, 0,998,1232,2613,2771,2904,3063,5162, |
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149 3R 560131 565269 CG9765-RG 2 - 560131 565269 0 8 937,150,162,105,72,65,308,37, 0,998,1232,2613,2771,2904,3063,5101, |
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150 3R 560131 565269 CG9765-RF 2 - 560131 565269 0 8 937,150,162,105,72,65,266,37, 0,998,1232,2613,2771,2904,3063,5101, |
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151 3R 485304 530979 CG31531-RC 2 + 485304 530979 0 9 311,161,54,59,352,207,143,157,4100, 0,656,11214,21196,37608,38466,40134,40588,41575, |
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152 3R 485304 530979 CG31531-RA 2 + 485304 530979 0 9 94,161,54,59,352,207,143,157,4100, 0,656,11214,21196,37608,38466,40134,40588,41575, |
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153 3R 485304 530979 CG31531.a 2 + 485304 530979 0 9 94,164,54,59,352,207,143,157,4100, 0,653,11214,21196,37608,38466,40134,40588,41575, |
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155 3R 779224 780974 CG14661-RA 1 - 779224 780974 0 3 776,95,215, 0,833,1535, |
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156 3R 962778 963295.0 CG12589-RA.3d 31 - 962778 963295.0 0 1 517, 0, |
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158 3R 1098664 1149566 CG32464-RN 3 - 1098664 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,153, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50749, |
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160 3R 1098664 1149566 CG32464-RB 1 - 1098664 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,180, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50722, |
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183 3R 538608 540025.0 CG9769.a 34 - 538608 540025.0 0 1 1417, 0, |
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187 3R 161142 163408 CG9772-RC 1 - 161142 163408 0 3 525,1334,139, 0,588,2127, |
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189 3R 267136 279036 CG31522-RB 1 - 267136 279036 0 10 1641,156,137,106,57,84,108,83,254,123, 0,2487,2697,2907,3091,3917,5010,5325,6286,11777, |
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190 3R 267136 276555 CG31522.a 3 - 267136 276555 0 10 1641,156,137,106,57,81,108,83,254,124, 0,2487,2697,2907,3091,4751,5010,5325,6286,9295, |
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196 3R 107426 127263 CG32490.d 3 + 107426 127263 0 8 167,161,181,12,158,133,1098,1752, 0,969,2521,6367,13424,13863,15783,18085, |
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197 3R 105905 127263 CG32490.e 3 + 105905 127263 0 8 173,161,181,12,158,133,1098,1752, 0,2490,4042,7888,14945,15384,17304,19606, |
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200 3R 107624 127263 CG32490-RN 3 + 107624 127263 0 7 101,161,181,158,133,1098,1752, 0,771,2323,13226,13665,15585,17887, |
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203 3R 107551 127263 CG32490-RM 3 + 107551 127263 0 7 174,161,181,158,133,1098,1752, 0,844,2396,13299,13738,15658,17960, |
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204 3R 107426 127263 CG32490.h 3 + 107426 127263 0 7 167,161,181,167,133,1098,1752, 0,969,2521,13415,13863,15783,18085, |
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205 3R 107425 127263 CG32490-RC 1 + 107425 127263 0 7 168,161,181,158,133,1098,1752, 0,970,2522,13425,13864,15784,18086, |
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206 3R 106272 127263 CG32490-RH 3 + 106272 127263 0 7 272,161,181,167,133,1098,1752, 0,2123,3675,14569,15017,16937,19239, |
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207 3R 106110 127263 CG32490-RI 3 + 106110 127263 0 7 81,161,181,167,133,1098,1752, 0,2285,3837,14731,15179,17099,19401, |
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208 3R 105905 127263 CG32490-RG 3 + 105905 127263 0 7 173,161,181,167,133,1098,1752, 0,2490,4042,14936,15384,17304,19606, |
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209 3R 108258 127263 CG32490-RA 3 + 108258 127263 0 6 298,181,167,133,1098,1752, 0,1689,12583,13031,14951,17253, |
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210 3R 120616 127263 CG32490-RJ 1 + 120616 127263 0 5 50,167,133,1098,1752, 0,225,673,2593,4895, |
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211 3R 117669 127263 CG32490-RL 3 + 117669 127263 0 5 125,167,133,1098,1752, 0,3172,3620,5540,7842, |
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212 3R 117459 127263 CG32490-RK 3 + 117459 127263 0 5 532,167,133,1098,1752, 0,3382,3830,5750,8052, |
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213 3R 107426 128309 CG32490.i 2 + 107426 128309 0 6 167,161,181,167,133,62, 0,969,2521,13415,13863,20821, |
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214 3R 110073 128309 CG32490-RE 1 + 110073 128309 0 4 55,167,133,62, 0,10768,11216,18174, |
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215 3R 263101 267050 CG14650-RA 1 + 263101 267050 0 6 2380,154,125,103,293,582, 0,2437,2647,2841,3013,3367, |
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216 3R 212966 215535 CG10520-RB 1 + 212966 215535 0 3 72,912,1355, 0,236,1214, |
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218 3R 163481 165640 CG1103-RA 1 + 163481 165640 0 3 164,303,875, 0,241,1284, |
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220 3R 474944 480360 CG1059-RA 1 + 474944 480360 0 5 545,150,1095,1354,1187, 0,1362,1576,2760,4229, |
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221 3R 358949 359693 CG31526-RB 2 + 358949 359693 0 3 204,320,104, 0,265,640, |
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225 3R 782716 787070 CG2016-RB 1 - 782716 787070 0 7 229,153,134,122,119,80,37, 0,295,506,2642,2909,3899,4317, |
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226 3R 782716 787070 CG2016.a 3 - 782716 787070 0 6 229,153,134,122,119,37, 0,295,506,2642,2909,4317, |
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227 3R 782716 787070 CG2016.b 2 - 782716 787070 0 6 229,153,134,122,119,455, 0,295,506,2642,2909,3899, |
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228 3R 37504 53244 CG1107-RA 3 + 37504 53244 0 13 30,8,124,68,200,231,140,933,410,374,962,162,772, 0,125,5661,6464,9335,9973,10275,10475,12816,13283,13715,14747,14968, |
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229 3R 46716 53244 CG1107-RB 1 + 46716 53244 0 9 323,231,140,933,410,374,962,162,772, 0,761,1063,1263,3604,4071,4503,5535,5756, |
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230 3R 47365 53244 CG1107.a 3 + 47365 53244 0 8 343,140,933,410,374,962,162,772, 0,414,614,2955,3422,3854,4886,5107, |
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231 3R 92675 94166 CG1092.a 1 + 92675 94166 0 2 252,1184, 0,307, |
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232 3R 92675 94166 CG1092-RA 1 + 92675 94166 0 2 252,1184, 0,307, |
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233 3R 92693 94005.0 CG1092-RB 34 + 92693 94005.0 0 1 1312, 0, |
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234 3R 953811 955661.0 CG12007.a 34 + 953811 955661.0 0 1 1850, 0, |
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235 3R 953809 955665.0 CG12007-RA 34 + 953809 955665.0 0 1 1856, 0, |
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236 3R 224271 227749 CG9853-RB 2 - 224271 227749 0 4 836,235,449,306, 0,896,1192,3172, |
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237 3R 224271 225734 CG9853-RA 1 - 224271 225734 0 3 836,235,271, 0,896,1192, |
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238 3R 261943 263051.0 CG9804-RA 31 - 261943 263051.0 0 1 1108, 0, |
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239 3R 160819 161237.0 CG14645-RA 34 + 160819 161237.0 0 1 418, 0, |
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240 3R 160819 161223.0 CG14645.a 31 + 160819 161223.0 0 1 404, 0, |
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241 3R 185509 192577 CG1090.b 3 + 185509 192577 0 6 500,231,945,976,189,907, 0,3490,3774,4778,5914,6161, |