Mercurial > repos > vipints > fml_wig2bed

annotate Wig_to_bedGraph/README @ 0:45f3fa82369f default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 18:08:31 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
1 INTRODUCTION
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
2
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
3 A tool for converting data in wiggle fixedStep or variableStep format to four column bedGraph format
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
4
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
5 CONTENTS
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
6
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
7 galaxy: Contains tool configuration file in *.xml format.
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
8
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
9 Wig2bedGraph.xml
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
10
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
11 t: Test data set. (move to your galaxy root folder/test-data/)
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
12
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
13 You may need to move the test files into your test-data directory so galaxy can find them.
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
14 If you want to run the functional tests eg as:
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
15
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
16 sh run_functional_tests.sh -id fml_wig2bed
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
17
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
18 script: Perl based script.
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
19
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
20 wig2bedGraph_converter.pl: Read data in wiggle fixedStep and variableStep and convert to bedGraph format.
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
21
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
22 REQUIREMENTS
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
23
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
24 Perl
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
25
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
26 COMMENTS/QUESTIONS
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
27
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
28 I can be reached at vipin.ts@tuebingen.mpg.de
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
29
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
30 LICENSE
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
31
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
32 Copyright (C) 2010 Friedrich Miescher Laboratory of the Max Planck Society
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
33
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
34 This program is free software; you can redistribute it and/or modify
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
35 it under the terms of the GNU General Public License as published by
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
36 the Free Software Foundation; either version 3 of the License, or
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
37 (at your option) any later version.
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
38
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
39 COURTESY
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
40
45f3fa82369f Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
vipints
parents:
diff changeset
41 Galaxy Team.