Mercurial > repos > vipints > rdiff
annotate rDiff/mex/get_reads_direct.h @ 0:0f80a5141704
version 0.3 uploaded
| author | vipints |
|---|---|
| date | Thu, 14 Feb 2013 23:38:36 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 /* written by Jonas Behr, Regina Bohnert and Gunnar Raetsch, FML Tuebingen, Germany, 2010 */ |
| 2 | |
| 3 #ifndef __GET_READS_DIRECT_H__ | |
| 4 #define __GET_READS_DIRECT_H__ | |
| 5 | |
| 6 #include <vector> | |
| 7 using std::vector; | |
| 8 #include "read.h" | |
| 9 | |
| 10 static int g_flag_on = 0, g_flag_off = 0; | |
| 11 | |
| 12 static int subsample = 100; | |
| 13 static int collapse = 0; | |
| 14 | |
| 15 int get_reads_from_bam(char* filename, char* region, vector<CRead*>* reads, char strand, int lsubsample); | |
| 16 | |
| 17 #endif |