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annotate rDiff/bin/start_interpreter.sh @ 2:233c30f91d66

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updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 07:15:44 -0400
parents 0f80a5141704
children
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1 #/bin/bash
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2 set -e
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3
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4 . `dirname $0`/rdiff_config.sh
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5
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6 export MATLAB_RETURN_FILE=`mktemp -t rDiff.XXXXXXXXXX.tmp`
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7
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8
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9 if [ "$RDIFF_INTERPRETER" == 'octave' ];
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10 then
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11 echo exit | ${RDIFF_OCTAVE_BIN_PATH} --no-window-system -q --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; warning('off', 'Octave:shadowed-function'); warning('off', 'Octave:deprecated-function') ; addpath $RDIFF_SRC_PATH; $1('$2'); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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12 fi
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13
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14 if [ "$RDIFF_INTERPRETER" == 'matlab' ];
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15 then
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16 echo exit | ${RDIFF_MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $RDIFF_SRC_PATH; $1('$2'); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ;
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17 fi
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18
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19 test -f $MATLAB_RETURN_FILE || exit 0
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20 ret=`cat $MATLAB_RETURN_FILE` ;
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21 rm -f $MATLAB_RETURN_FILE
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22 exit $ret
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