Mercurial > repos > vipints > rdiff
view rDiff/bin/start_interpreter.sh @ 2:233c30f91d66
updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 07:15:44 -0400 |
parents | 0f80a5141704 |
children |
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#/bin/bash set -e . `dirname $0`/rdiff_config.sh export MATLAB_RETURN_FILE=`mktemp -t rDiff.XXXXXXXXXX.tmp` if [ "$RDIFF_INTERPRETER" == 'octave' ]; then echo exit | ${RDIFF_OCTAVE_BIN_PATH} --no-window-system -q --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; warning('off', 'Octave:shadowed-function'); warning('off', 'Octave:deprecated-function') ; addpath $RDIFF_SRC_PATH; $1('$2'); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; fi if [ "$RDIFF_INTERPRETER" == 'matlab' ]; then echo exit | ${RDIFF_MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $RDIFF_SRC_PATH; $1('$2'); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; fi test -f $MATLAB_RETURN_FILE || exit 0 ret=`cat $MATLAB_RETURN_FILE` ; rm -f $MATLAB_RETURN_FILE exit $ret