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annotate rDiff/mex/get_reads_direct.h @ 3:29a698dc5c7e default tip

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Merge multiple heads.
author Dave Bouvier <dave@bx.psu.edu>
date Mon, 27 Jan 2014 14:15:36 -0500
parents 0f80a5141704
children
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1 /* written by Jonas Behr, Regina Bohnert and Gunnar Raetsch, FML Tuebingen, Germany, 2010 */
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3 #ifndef __GET_READS_DIRECT_H__
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4 #define __GET_READS_DIRECT_H__
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5
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6 #include <vector>
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7 using std::vector;
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8 #include "read.h"
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9
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10 static int g_flag_on = 0, g_flag_off = 0;
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12 static int subsample = 100;
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13 static int collapse = 0;
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15 int get_reads_from_bam(char* filename, char* region, vector<CRead*>* reads, char strand, int lsubsample);
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17 #endif