comparison rDiff/mex/get_reads_direct.h @ 0:0f80a5141704

version 0.3 uploaded
author vipints
date Thu, 14 Feb 2013 23:38:36 -0500
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-1:000000000000 0:0f80a5141704
1 /* written by Jonas Behr, Regina Bohnert and Gunnar Raetsch, FML Tuebingen, Germany, 2010 */
2
3 #ifndef __GET_READS_DIRECT_H__
4 #define __GET_READS_DIRECT_H__
5
6 #include <vector>
7 using std::vector;
8 #include "read.h"
9
10 static int g_flag_on = 0, g_flag_off = 0;
11
12 static int subsample = 100;
13 static int collapse = 0;
14
15 int get_reads_from_bam(char* filename, char* region, vector<CRead*>* reads, char strand, int lsubsample);
16
17 #endif