--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rDiff/mex/get_reads_direct.h	Thu Feb 14 23:38:36 2013 -0500
@@ -0,0 +1,17 @@
+/* written by Jonas Behr, Regina Bohnert and Gunnar Raetsch, FML Tuebingen, Germany, 2010 */
+
+#ifndef __GET_READS_DIRECT_H__
+#define __GET_READS_DIRECT_H__
+
+#include <vector>
+  using std::vector;
+#include "read.h"
+
+static int g_flag_on = 0, g_flag_off = 0;
+
+static int subsample = 100; 
+static int collapse = 0;
+
+int get_reads_from_bam(char* filename, char* region, vector<CRead*>* reads, char strand, int lsubsample);
+
+#endif