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Merge multiple heads.
author Dave Bouvier <dave@bx.psu.edu>
date Mon, 27 Jan 2014 14:15:36 -0500
parents 0f80a5141704
children
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/* written by Jonas Behr, Regina Bohnert and Gunnar Raetsch, FML Tuebingen, Germany, 2010 */

#ifndef __GET_READS_DIRECT_H__
#define __GET_READS_DIRECT_H__

#include <vector>
  using std::vector;
#include "read.h"

static int g_flag_on = 0, g_flag_off = 0;

static int subsample = 100; 
static int collapse = 0;

int get_reads_from_bam(char* filename, char* region, vector<CRead*>* reads, char strand, int lsubsample);

#endif