Mercurial > repos > watsocam > palom

diff Dockerfile @ 2:e30f622ef2c3 draft default tip

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/palom commit 08d9f2d59c26e67a162d75ae6e8b5fa734ab7b3c
author goeckslab
date Tue, 06 Sep 2022 21:15:56 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Dockerfile	Tue Sep 06 21:15:56 2022 +0000
@@ -0,0 +1,18 @@
+FROM python:3.7.12
+
+ENV OPS_VERSION=3.4.1
+
+ENV PALOM_VERSION=2022.8.2
+
+RUN apt update -y && apt install -y openslide-tools python3-opencv
+
+RUN cd /opt && \
+    wget https://github.com/openslide/openslide/releases/download/v$OPS_VERSION/openslide-$OPS_VERSION.tar.gz && \
+    tar -zxvf openslide-$OPS_VERSION.tar.gz  && \
+    cd openslide-$OPS_VERSION
+
+RUN /opt/openslide-$OPS_VERSION/configure  && \
+    make && \
+    make install
+
+RUN pip install zarr==2.10.3 pandas palom==$PALOM_VERSION
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