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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/palom commit 08d9f2d59c26e67a162d75ae6e8b5fa734ab7b3c
author goeckslab
date Tue, 06 Sep 2022 21:15:56 +0000
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FROM python:3.7.12

ENV OPS_VERSION=3.4.1

ENV PALOM_VERSION=2022.8.2

RUN apt update -y && apt install -y openslide-tools python3-opencv

RUN cd /opt && \
    wget https://github.com/openslide/openslide/releases/download/v$OPS_VERSION/openslide-$OPS_VERSION.tar.gz && \
    tar -zxvf openslide-$OPS_VERSION.tar.gz  && \
    cd openslide-$OPS_VERSION

RUN /opt/openslide-$OPS_VERSION/configure  && \
    make && \
    make install

RUN pip install zarr==2.10.3 pandas palom==$PALOM_VERSION