Mercurial > repos > watsocam > palom
changeset 1:69f8e01b2e17 draft
"planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/palom commit a19fd3bd500b83efe504234f3306b41e0334312d"
| author | watsocam |
|---|---|
| date | Wed, 18 May 2022 22:55:21 +0000 |
| parents | b66b59713319 |
| children | e30f622ef2c3 |
| files | palom_svs.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/palom_svs.xml Wed Mar 16 20:17:58 2022 +0000 +++ b/palom_svs.xml Wed May 18 22:55:21 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="palom" name="palom" version="2021.12.0.0"> +<tool id="palom" name="palom" version="2021.12.0.1"> <description>Piecewise alignment for layers of mosaics. A tool for registering whole-slide images with different IHC stainings</description> <macros> <import>macros.xml</import> @@ -46,7 +46,7 @@ pixel_size = None #if $pixel_size: -pixel_size = int($pixel_size) +pixel_size = float($pixel_size) #end if level = 0 @@ -76,7 +76,7 @@ <param name="reference_image" type="data" format="tiff" label="Hematoxylin reference image" help="An H+E image in .svs format"/> <param name="moving_images" type="data_collection" label="Moving Images (data collection)" help="A collection of svs-format images to align to the reference image"/> <param name="channels" type="data" label="Channel and mode dataframe" help="A CSV file with 'channel' and 'mode' columns, with a row corresponding to each moving image"/> - <param name="pixel_size" type="integer" optional="true" label="Pixel Size" help="defaults to px size of reference image"/> + <param name="pixel_size" type="float" optional="true" label="Pixel Size" help="defaults to px size of reference image"/> <param name="level" type="integer" optional="true" label="Level" help="pyramid level, defaults to 0 (lowest level)"/> </inputs> <outputs>