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0
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1
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2 v2.0.3 - May 19, 2013
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3 1. Fix bug in utils.py
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4 2. Add UPDATE file
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5
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1
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6 v2.0.4 - July 29, 2013
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7 1. Update README.md (Definition of ATCGmap format)
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8 2. Fix the "None" output when no parameter
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9 3. Fix error report when using wrong path for short reads aligner
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10 4. MIT License
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11
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12 V2.0.5 - Nov 31, 2013
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13 1. Fix bug in "bs_single_end.py" for "numbers_premapped_lst[0] += len(Unique_FW_C2T)"
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14 2. Make the default aligner to Bowtie
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15 3. Update the README file
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16 4. "-r N" in call-methylation will only control Wiggle file
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17 5. Change the output of pair-end mapping to the standard format of SAM file (the QNAME and FLAG fields)
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18 6. The artificially synthesized bases at the ends of RRBS fragments are removed when removing the adapters
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19 7. Add the total number of bases of uniquely mapped reads to the STDOUT
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20 8. Support "end-to-end" alignment mode in the Galaxy version
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21 9. Support input file in both TEXT or Compressed (.gz) format
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22 10. "-m" allow both INT and FLOAT as input. Ex: '-m 5' or '-m 0.05'
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23 11. Add mode information in output
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0
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24
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25
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1
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26
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27
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