Mercurial > repos > weilong-guo > bs_seeker2
comparison BSseeker2/RELEASE_NOTES @ 1:8b26adf64adc draft default tip
V2.0.5
| author | weilong-guo |
|---|---|
| date | Tue, 05 Nov 2013 01:55:39 -0500 |
| parents | e6df770c0e58 |
| children |
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| 0:e6df770c0e58 | 1:8b26adf64adc |
|---|---|
| 1 | 1 |
| 2 v2.0.3 - May 19, 2013 | 2 v2.0.3 - May 19, 2013 |
| 3 1. Fix bug in utils.py | 3 1. Fix bug in utils.py |
| 4 2. Add UPDATE file | 4 2. Add UPDATE file |
| 5 | 5 |
| 6 v2.0.4 - July 29, 2013 | |
| 7 1. Update README.md (Definition of ATCGmap format) | |
| 8 2. Fix the "None" output when no parameter | |
| 9 3. Fix error report when using wrong path for short reads aligner | |
| 10 4. MIT License | |
| 11 | |
| 12 V2.0.5 - Nov 31, 2013 | |
| 13 1. Fix bug in "bs_single_end.py" for "numbers_premapped_lst[0] += len(Unique_FW_C2T)" | |
| 14 2. Make the default aligner to Bowtie | |
| 15 3. Update the README file | |
| 16 4. "-r N" in call-methylation will only control Wiggle file | |
| 17 5. Change the output of pair-end mapping to the standard format of SAM file (the QNAME and FLAG fields) | |
| 18 6. The artificially synthesized bases at the ends of RRBS fragments are removed when removing the adapters | |
| 19 7. Add the total number of bases of uniquely mapped reads to the STDOUT | |
| 20 8. Support "end-to-end" alignment mode in the Galaxy version | |
| 21 9. Support input file in both TEXT or Compressed (.gz) format | |
| 22 10. "-m" allow both INT and FLOAT as input. Ex: '-m 5' or '-m 0.05' | |
| 23 11. Add mode information in output | |
| 6 | 24 |
| 7 | 25 |
| 26 | |
| 27 |